RNA id: CI01000034_02092229_02092596.mRNA


Basic Information

Item Value
RNA id CI01000034_02092229_02092596.mRNA
length 526
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000034_02092229_02092596
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2091959 ~ 2092642 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGATTTAACATTTGACCGTGTAACTTTTTTTTGCTCAGGGCAAGATGGCGCGGGATATGTCTGATAAGGAGATCCTGAAAATGGAGCTGGAACAACTTCAGAAGGAGGTTAAGAACACTAGAGAGCCAGTTTCTAAAACCGCAAAGGAGATTTGTGAATGGGTTGAGGCCCAAGCCGCAGAAGATCCTCTCATAAAAGGAGTTCCTGAGGACAAAAACCCCTTCAAGGATAAGGGTGGATGCATAATAACGTAGCCCATGTGATTTCTTTTGGCAAAAGTATACGAGGATGTGTTCATTTGTGCTAATGAGAGCTGTTTAGCAGTCAGTTATCTGAACTTAAATGAGGAGTAAGCACATTGTGCTAAGCTTTAGCATCTCTACTAGACGCCATAGAGACTGCAAGATTTGAACAAATACTTGACCGTACAGTGTCAAAAAGGATTGGTTTTGGATGTGTGTATCTCTTCTTGTACTTATTATTAAGGATGGCAGCCCTCTTGAAGCAAACTCTTTGTAAATAAA

Function

GO:

id name namespace
GO:0005834 heterotrimeric G-protein complex cellular_component

KEGG:

id description
K04549 GNGT2; guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195247 lncRNA downstream 17053 2074696 ~ 2074906 (-) True G171860
TU195182 lncRNA downstream 130310 1959454 ~ 1961649 (-) True G171815
TU195107 lncRNA downstream 138595 1952910 ~ 1953364 (-) True G171745
TU195110 lncRNA downstream 139181 1952458 ~ 1952778 (-) True G171748
TU195105 lncRNA downstream 139593 1950142 ~ 1952366 (-) True G171743
TU195256 lncRNA upstream 3208 2095850 ~ 2096308 (-) True G171867
TU195235 lncRNA upstream 70625 2163267 ~ 2165434 (-) True G171849
TU195227 lncRNA upstream 310451 2403093 ~ 2428544 (-) True G171841
TU195279 lncRNA upstream 450521 2543163 ~ 2543769 (-) True G171890
TU195304 lncRNA upstream 496902 2589544 ~ 2589761 (-) True G171907
CI01000034_02010544_02026521.mRNA mRNA downstream 65234 2010142 ~ 2026725 (-) True CI01000034_02010544_02026521
CI01000034_01957876_01995623.mRNA mRNA downstream 96143 1957876 ~ 1995816 (-) True CI01000034_01957876_01995623
CI01000034_01842093_01847705.mRNA mRNA downstream 244254 1840937 ~ 1847705 (-) True CI01000034_01842093_01847705
CI01000034_01785791_01788743.mRNA mRNA downstream 302144 1785235 ~ 1789815 (-) True CI01000034_01785791_01788743
CI01000034_01718736_01720031.mRNA mRNA downstream 371713 1718606 ~ 1720246 (-) True CI01000034_01718736_01720031
CI01000034_02098976_02103261.mRNA mRNA upstream 4961 2097603 ~ 2103261 (-) True CI01000034_02098976_02103261
CI01000034_02110958_02136112.mRNA mRNA upstream 18304 2110946 ~ 2136112 (-) True CI01000034_02110958_02136112
CI01000034_02154099_02162106.mRNA mRNA upstream 59953 2152595 ~ 2162106 (-) True CI01000034_02154099_02162106
CI01000034_02166509_02170478.mRNA mRNA upstream 73359 2166001 ~ 2170478 (-) True CI01000034_02166509_02170478
CI01000034_02171666_02177554.mRNA mRNA upstream 78962 2171604 ~ 2178398 (-) True CI01000034_02171666_02177554
TU195117 other downstream 225586 1864118 ~ 1866373 (-) True G171755
TU194733 other downstream 773705 1318049 ~ 1318254 (-) True G171408
TU194720 other downstream 1014737 1072584 ~ 1077222 (-) True G171395
TU194626 other downstream 1507676 577872 ~ 584283 (-) True G171318
TU194534 other downstream 1824713 229404 ~ 267246 (-) True G171229
TU195220 other upstream 349179 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 349179 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 349277 2441919 ~ 2446293 (-) True G171835
TU195214 other upstream 417171 2509813 ~ 2510031 (-) True G171834
TU195212 other upstream 417511 2510153 ~ 2511521 (-) True CI01000034_02510595_02511512

Expression Profile