RNA id: CI01000034_02575638_02577407.mRNA


Basic Information

Item Value
RNA id CI01000034_02575638_02577407.mRNA
length 1023
RNA type mRNA
GC content 0.38
exon number 5
gene id CI01000034_02575638_02577407
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2575344 ~ 2577572 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTACCAACAAACACAACTTGTAAAGGATACACAATAATTCAGCAAGGTAAGCAGTCAAATTAGTGGCTTATAATTAATCAAATTATACTATATTGCTTGAAATTGATGAATCACGTTGCTTTAAACTCATACGCTCTCCGTTCCTTTAAAGGCATCTCTCAGAATGGACCTTCATCGTGTGGCTTGGCTGTGCACCTTTTTCTGCTTTGCGCAGGTCTGGTCTTTGCCAACAAACTGCATCCTTAGGAAGGACTTGATGGAGAAAACCCGTACATTTATAGAGACTGCGGGTGGCCTTTTCCCTTCGCAATGCCTGGACGACCACGTTTCCATATCTTTCCCCAAAAATGTGTTTGAGTCCAGTAACACGCTTCAGGTTACTGGTGTTGAAAAGGCTGTTTACCAGACACTCCAGAAAATTGACGCACTGTTTGAGAACTACAGTGCTCCAGACCAGTGGGATGAAGAAAAAATGACTGACTTTCAAGGCATCTTATACCGGCAGATTGAGGAGAGCAAATGCATCATGAGCAAGTCTGGAGCGGAAGAGGATTTTCCCAGCAGAGAAGCCTCTCTTAAGGTTTACTTCGAAGCTATATCCTCAACTCTGAAAGAAAAGGATTTCAGTTTCTGCGCATGGGAAATCGTGAGAAGTGAGATTCTCCGCACCCTGAACTTCATATTGAAGCACAACTCTGACATCATGTATGAATCTCCACAACCCTAGATGCTTGCCTGCATGCTTATTTATTTATTTATTTATTCATTCATTCATTCATTCATTCATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGTCTTTGTGACTATAGAGGTGTATTCGCTTTCTATGCCTGATCACTGTAACGGAAATAACTGTCACTTTCACTTTTGATTTTGATTGTTACATCATTTCCATTCAGCACTGGACAGTTCACAATTTGAACACCTCTTTATTCATACATTCAGAATGTTGTATTTTTGTATGTTTTTTGTAATTACTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195279 lncRNA downstream 31575 2543163 ~ 2543769 (-) True G171890
TU195227 lncRNA downstream 146800 2403093 ~ 2428544 (-) True G171841
TU195235 lncRNA downstream 409910 2163267 ~ 2165434 (-) True G171849
TU195256 lncRNA downstream 479036 2095850 ~ 2096308 (-) True G171867
TU195247 lncRNA downstream 500438 2074696 ~ 2074906 (-) True G171860
TU195304 lncRNA upstream 11972 2589544 ~ 2589761 (-) True G171907
TU195349 lncRNA upstream 92584 2670156 ~ 2670385 (-) True G171937
TU195351 lncRNA upstream 93283 2670855 ~ 2671069 (-) True G171939
TU195338 lncRNA upstream 102106 2679678 ~ 2735927 (-) True G171926
TU195324 lncRNA upstream 188518 2766090 ~ 2774240 (-) True G171920
CI01000034_02513892_02532734.mRNA mRNA downstream 42610 2513878 ~ 2532734 (-) True CI01000034_02513892_02532734
CI01000034_02510595_02511512.mRNA mRNA downstream 63832 2510334 ~ 2511512 (-) False CI01000034_02510595_02511512
CI01000034_02459679_02504620.mRNA mRNA downstream 70322 2459679 ~ 2505022 (-) True CI01000034_02459679_02504620
CI01000034_02295276_02337198.mRNA mRNA downstream 238146 2295276 ~ 2337198 (-) True CI01000034_02295276_02337198
CI01000034_02182977_02213069.mRNA mRNA downstream 362275 2182964 ~ 2213069 (-) True CI01000034_02182977_02213069
CI01000034_02581924_02584745.mRNA mRNA upstream 4007 2581579 ~ 2584745 (-) True CI01000034_02581924_02584745
CI01000034_02585852_02587541.mRNA mRNA upstream 8060 2585632 ~ 2587541 (-) True CI01000034_02585852_02587541
CI01000034_02596578_02625089.mRNA mRNA upstream 18597 2596169 ~ 2625407 (-) True CI01000034_02596578_02625089
CI01000034_02673701_02680445.mRNA mRNA upstream 95949 2673521 ~ 2680753 (-) True CI01000034_02673701_02680445
CI01000034_02712912_02755978.mRNA mRNA upstream 135115 2712687 ~ 2755978 (-) True CI01000034_02712912_02755978
TU195214 other downstream 63823 2509813 ~ 2510031 (-) True G171834
TU195212 other downstream 63823 2510153 ~ 2511521 (-) True CI01000034_02510595_02511512
TU195220 other downstream 129051 2441821 ~ 2446293 (-) False G171835
TU195428 other upstream 657391 3234963 ~ 3236615 (-) False G172016
TU195584 other upstream 813941 3391513 ~ 3397813 (-) False G172151
TU195571 other upstream 814117 3391689 ~ 3397648 (-) False G172151
TU195573 other upstream 814190 3391762 ~ 3397648 (-) False G172151
TU195577 other upstream 814190 3391762 ~ 3397648 (-) False G172151

Expression Profile