RNA id: CI01000034_03247806_03248810.mRNA


Basic Information

Item Value
RNA id CI01000034_03247806_03248810.mRNA
length 662
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000034_03247806_03248810
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3247794 ~ 3248947 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGCAGTTCAGAGAGGACAGTTTGTGTATCAGTGTCATGGAAACACACCAACACAGGTGTGTCATTTGCAACAGCGTCTTCATATTGTGTGTCCCCATGTTCTTATCCATTTAACTCTATATTATGATAAGAGCCGATGATGATGCCGTGGACAGTCTCAAATGAAAAACAAAGTCTGCAGTTACGAGAGGACCCATCCAACATACAGATCCTCCAACAACCTGCTCCTCAACCAACCACTAATTTGCAGCAGTTCTCAGCAGCAGTGGCGTCACCTTTTGCCCCTGTGCGTCCAGGACACATTAGAGAGGACCTTGTGGAACTGATGATGATACAGAATGCACAGATGCATCAAATCATCATGAATAGTATGAGCATGTCTGTACTCAACACCTTCAACTACACACACGCACCTGAGCAGACTGCAAGAATCAATATGGTTTTAGAGGAAGAACCTGACATTTACCACCATTATTACCCACCTGGGCCTGACTTCTGTTACCCAGGTTGGGTGCCTTTACCCCAGCAACTGATCCATGCCCCACCTCCTGTTCTCCAGAACATCCAGGAACCACCACAACATGCACAGCCAGTTCACACAAAATGCAGGGACAGGTTAGACAGATACAGCATACAAATTACTATTTAAAATAACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195429 lncRNA downstream 12447 3234963 ~ 3235347 (-) True G172016
TU195432 lncRNA downstream 14082 3233519 ~ 3233712 (-) True G172019
TU195441 lncRNA downstream 15797 3227359 ~ 3231997 (-) True G172025
TU195433 lncRNA downstream 33700 3210706 ~ 3214094 (-) True G172020
TU195448 lncRNA downstream 57285 3189912 ~ 3190509 (-) True G172031
TU195505 lncRNA upstream 12886 3261833 ~ 3262036 (-) True G172088
TU195507 lncRNA upstream 15496 3264443 ~ 3264665 (-) True G172090
TU195509 lncRNA upstream 16526 3265473 ~ 3265763 (-) True G172092
TU195539 lncRNA upstream 55080 3304027 ~ 3304263 (-) True G172122
TU195447 lncRNA upstream 75537 3324484 ~ 3325211 (-) True G172030
CI01000034_02875948_02953386.mRNA mRNA downstream 293274 2875658 ~ 2954520 (-) True CI01000034_02875948_02953386
CI01000034_02778206_02786310.mRNA mRNA downstream 461484 2777700 ~ 2786310 (-) True CI01000034_02778206_02786310
CI01000034_02712912_02755978.mRNA mRNA downstream 491816 2712687 ~ 2755978 (-) True CI01000034_02712912_02755978
CI01000034_02673701_02680445.mRNA mRNA downstream 567041 2673521 ~ 2680753 (-) True CI01000034_02673701_02680445
CI01000034_02596578_02625089.mRNA mRNA downstream 622387 2596169 ~ 2625407 (-) True CI01000034_02596578_02625089
CI01000034_03250695_03253982.mRNA mRNA upstream 1455 3250402 ~ 3254202 (-) True CI01000034_03250695_03253982
CI01000034_03255619_03266388.mRNA mRNA upstream 6321 3255268 ~ 3267690 (-) True CI01000034_03255619_03266388
CI01000034_03285980_03289258.mRNA mRNA upstream 36843 3285790 ~ 3289258 (-) True CI01000034_03285980_03289258
CI01000034_03577874_03611044.mRNA mRNA upstream 328507 3577454 ~ 3611099 (-) True CI01000034_03577874_03611044
CI01000034_03659420_03661699.mRNA mRNA upstream 410343 3659290 ~ 3661699 (-) True CI01000034_03659420_03661699
TU195428 other downstream 11179 3234963 ~ 3236615 (-) False G172016
TU195214 other downstream 736273 2509813 ~ 2510031 (-) True G171834
TU195212 other downstream 736273 2510153 ~ 2511521 (-) True CI01000034_02510595_02511512
TU195220 other downstream 801501 2441821 ~ 2446293 (-) False G171835
TU195584 other upstream 142566 3391513 ~ 3397813 (-) False G172151
TU195571 other upstream 142742 3391689 ~ 3397648 (-) False G172151
TU195573 other upstream 142815 3391762 ~ 3397648 (-) False G172151
TU195577 other upstream 142815 3391762 ~ 3397648 (-) False G172151
TU195735 other upstream 917552 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272

Expression Profile