RNA id: CI01000034_03255619_03266388.mRNA


Basic Information

Item Value
RNA id CI01000034_03255619_03266388.mRNA
length 2736
RNA type mRNA
GC content 0.39
exon number 7
gene id CI01000034_03255619_03266388
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3255268 ~ 3267690 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGTTGTCTTTTCACTTTACCTGTAGTTTATTCCAGACTATATATGGAAGCTTGTTTGTGCCACAGAATAAAAACAAAAAAGTTTTTTTTCTTTTTTTTTCTCAGAACTGTGAGAACATCAATAATCAGAATTCTGGTACAAGGAAATTGTGACGCTTGGAAAAAATCTAATGCCCCATCATATGAATACAATACATTCAGTGACATGACATCAACCCCCAGGGCTTGAGGGAACGCTTTCTTTGAAAACATGTTTGTTGAAATAAAACTGGTAAAACTAGATCACTGAGCAAGACAAACAGTCATCTTCATTAACATTTTTATAAATTTAAATGCCACTCAGAAACAGAAATAGTGATAACAATACTTATTTTACAAAACATTGATGGAGGTAAGTCTCTCTCTCTCTCTCTCTCTAAATATATATATATATATATGTGTGTGTGTGACACACAGTGACCTCACATTTTTAGACAGAAGATTTAAATTTTTATTTTTTACATATTTAGTAGGCTACTCTTCATGACTCAGCTGTTCTTCTTTCATATATTATCTTTGCCCTAATGAACTCACCAGCAAAACTTTTATCTTTGAAACACATAAGCTAAATATGTTCTTTATGCATGAATATAGGGCCTACATTACTGTTTCTAAAGTCTGGGGTCAGTAAGATTGTTTGTTTTACTACTAAACACAGCTCCCACAAAACTCGCTCCTCCACTGTGAATAAATCGCCATCCGAATGCATATTGCAAATTTATTTTTACAGACGTCTATATGAGAAACAATTACCATCCGAATATCACTGGATAACTTTATTGTTTATGTAGGCTAATGTTTTTAATAAGAGACAGGCAGACAGGGAGGTTTGAGAGCAAAAAGATCACCAAGTAATGAAAATGGAAGACTTTTGTGTATTTTTAACATATTTTAGATATACAATGTAGCATGCTCATTCAATATACTTTTTTTTTTGGTCCTAAATTGCAAGCGTCAACATTGAGATGAACACATTACACCATTTCAGACACCTGAAATGGTGTCTGAAATTGTGTCGCTTGGTATAAAGCGACTGAATTGAAATCAATAAGTAATCCTTAAAAATCAATAAGTCATCCTTAAAAATACCTAGGTGACCGGGGTGTGTACTGTACTGACAGAACAAAGGCTTCCAATGAGTCAGAGTCTCTTGGTGGTGGGGGCTGAGAACTCTTGATAAACACGACAGTACCTGCTTTGCATCTCATTAGAGAGCTGAGAGTAGAGGTAACAGCAGTCAGAACACAGACCAGAGCATAAGTATGAAGTTTAACACAGCTTTGAGTGTTGTTGGAACCTTACTTCTCAACATAGCAGACGTAACGTCCGCTTTTAGAGAGTCGTATTTGTTTACAGAATTCACCCATGCTCATTTGCTTCGTGGTGTGCGTCTCTCACTAACATTTGCCTTTGTTGTTGGATGTTTCAATTGTTCTCTCTGCCAGTTAGATGTATGTGGTCATGCTCCCCTCAACAACAAGATTGTTGGAGGAGAAAATGCAGCAGCAGGGTCCTGGCCGTGGCAAGTCAGCATTCAAAGTGTCAGTTTTGGAGGCCATTTTTGTGGCGGGAGTCTGATTAATAAAGACTGGGTTTTGTCTGCTGCTCACTGCTTCCAGAGTTCCTCCCTGGGTACCATTGAGGTCTACATAGGACGTCAGATCCAGTCGGGCTCAAACCCTTATGAGGAATACAGGACAGCGAGTCAAGTCATTACCCATCCTAACTATAACAATCCTAGCGATGACAACGACATAGCCCTGCTCCAGCTCTCTTCCTCCGTGACTTTCTCTGATTATATTAACCCAGTCTGTCTGGCTGCTGCTGGTAGTACATTTGCTGCAGGTACAGAGAGCTGGGTCACTGGATGGGGAACGCTACAGTCTGGAAGCAACCAGATTTCTAACATACTGCAGGAGGTGATAATACCAATTGTGAGCAACAGTGACTGTAATAATGCTTATGGAGGTGGCATCACAAGCAATATGATTTGTGCTGGATTGTTGAATCAGGGAGGGAAAGATTCATGTCAGGGAGACTCTGGAGGTCCAATGGTCTTTAAGAATGGCTCCCTGTGGATTCAGTCTGGCATTGTGAGTTTTGGTCAAGGATGTGCTGATCCCAACTATCCTGGTGTATACACCCGAGTGTCTCAGTACCAGGACTGGATCAACTCTTTGATCATGGGCAGCAACCAGTCTGGATATGTCTCCTTCACTAACCAGCCTGGATATGTCTCCTTCACTTCCGATGGATTCAGAAGCTCACCTAACCTGCTTTTATTTTCCATTTCTCTCACATTCTCCATTATTCCTTTCATATGCTCCGTATTTCTCTCTTCATAGAGATTATTTGAATGACAATACTCAGGGTTCTTTGATTGAAAGGACAATTGTACTGTACAAGTTCTCATAGGCGAAGAGAGCAGGTATATGTTTATGCTGTCATTTATTCTTTATCATTTAAAAATATACTAATCTTGGAAAGCTACTCTTATGATTGAGTACATTGTTTACATTTAAAGTTTGTGCACTAATGAAGTTCAGCAAGCATGTGAACTGATATTTAGAGACTATATAAGAGACTACTGAATTTATTTTGACTAGGTGTATTACACTGCAAATACACTGGAGCCACTTTTGTATTAATATATTATTTACAATAACACTCAGTCTGTCTGAATATCTGTAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195429 lncRNA downstream 19921 3234963 ~ 3235347 (-) True G172016
TU195432 lncRNA downstream 21556 3233519 ~ 3233712 (-) True G172019
TU195441 lncRNA downstream 23271 3227359 ~ 3231997 (-) True G172025
TU195433 lncRNA downstream 41174 3210706 ~ 3214094 (-) True G172020
TU195448 lncRNA downstream 64759 3189912 ~ 3190509 (-) True G172031
TU195539 lncRNA upstream 36337 3304027 ~ 3304263 (-) True G172122
TU195447 lncRNA upstream 56794 3324484 ~ 3325211 (-) True G172030
TU195434 lncRNA upstream 61120 3328810 ~ 3330494 (-) True G172021
TU195567 lncRNA upstream 119942 3387632 ~ 3387869 (-) True G172147
TU195568 lncRNA upstream 120312 3388002 ~ 3388238 (-) True G172148
CI01000034_03250695_03253982.mRNA mRNA downstream 1066 3250402 ~ 3254202 (-) True CI01000034_03250695_03253982
CI01000034_03247806_03248810.mRNA mRNA downstream 6321 3247794 ~ 3248947 (-) True CI01000034_03247806_03248810
CI01000034_02875948_02953386.mRNA mRNA downstream 300748 2875658 ~ 2954520 (-) True CI01000034_02875948_02953386
CI01000034_02778206_02786310.mRNA mRNA downstream 468958 2777700 ~ 2786310 (-) True CI01000034_02778206_02786310
CI01000034_02712912_02755978.mRNA mRNA downstream 499290 2712687 ~ 2755978 (-) True CI01000034_02712912_02755978
CI01000034_03285980_03289258.mRNA mRNA upstream 18100 3285790 ~ 3289258 (-) True CI01000034_03285980_03289258
CI01000034_03577874_03611044.mRNA mRNA upstream 309764 3577454 ~ 3611099 (-) True CI01000034_03577874_03611044
CI01000034_03659420_03661699.mRNA mRNA upstream 391600 3659290 ~ 3661699 (-) True CI01000034_03659420_03661699
CI01000034_03803160_03827982.mRNA mRNA upstream 535142 3802832 ~ 3827982 (-) True CI01000034_03803160_03827982
CI01000034_03911480_03913846.mRNA mRNA upstream 643385 3911075 ~ 3913846 (-) True CI01000034_03911480_03913846
TU195428 other downstream 18653 3234963 ~ 3236615 (-) False G172016
TU195214 other downstream 743747 2509813 ~ 2510031 (-) True G171834
TU195212 other downstream 743747 2510153 ~ 2511521 (-) True CI01000034_02510595_02511512
TU195221 other downstream 808975 2441821 ~ 2446293 (-) False G171835
TU195584 other upstream 123823 3391513 ~ 3397813 (-) False G172151
TU195571 other upstream 123999 3391689 ~ 3397648 (-) False G172151
TU195573 other upstream 124072 3391762 ~ 3397648 (-) False G172151
TU195577 other upstream 124072 3391762 ~ 3397648 (-) False G172151
TU195735 other upstream 898809 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272

Expression Profile