RNA id: CI01000034_03432846_03437608.mRNA


Basic Information

Item Value
RNA id CI01000034_03432846_03437608.mRNA
length 552
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000034_03432846_03437608
representative False

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3432846 ~ 3438839 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATAGTAGTTCTGAAAGTTGTGGTAGTTCAAAGTAAGATACCTAAAATCGCTGCAGATAACACTAAAGTGTGCGTGCAAACTCGCAAACTGACCCTAGATCAGACTCAGCGACCAGTGTTGATCCCACTATTTATTTTCATTGGCGGTGGATGTACCATGTCTCTTTCATATCTGGCTCGCCTGGCAATGCGCAACCCTGATGTCTGCTGGGACAAAAAGAACAACCCAGAGCCTTGGAATAAACTGGGTCCCAATGATCAGTACAAGTTCTTCTCAGTGAACATGGACTACAGCAAGCTGAAGAAGGACCGTCCTGACTACTAAACGCATCCAGAGAATCCAGATGCCCAGTGCCTGACCAAAGGCTTAAAAATCAAACTAAAGAACAACAAGATGTCCACACACTTTTCCTCAATGGCCCTTGTTCCTATATTAATTTATGCAAAGAGACTAAATTACACAGATGTTGTCTTTGCTTATCTGGATCCTTTTTAACATCTATGATGTCTTGTGTATTTTCTTCCCATACTTTTTAGTCAGAGACGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193401 lncRNA upstream 135623 3294863 ~ 3297223 (+) True G170225
TU193459 lncRNA upstream 149674 3281406 ~ 3283172 (+) True G170280
TU193455 lncRNA upstream 172810 3259782 ~ 3260036 (+) True G170276
TU193453 lncRNA upstream 174777 3257790 ~ 3258069 (+) True G170274
TU193420 lncRNA upstream 183716 3245746 ~ 3249130 (+) True G170244
TU193485 lncRNA downstream 138594 3576427 ~ 3576638 (+) True G170305
TU193508 lncRNA downstream 159845 3597678 ~ 3597877 (+) True G170328
TU193510 lncRNA downstream 160869 3598702 ~ 3598939 (+) True G170330
TU193512 lncRNA downstream 162171 3600004 ~ 3600216 (+) True G170332
TU193516 lncRNA downstream 165181 3603014 ~ 3603228 (+) True G170336
CI01000034_03422028_03431218.mRNA mRNA upstream 1250 3421289 ~ 3431596 (+) True CI01000034_03422028_03431218
CI01000034_03407574_03419313.mRNA mRNA upstream 13455 3405952 ~ 3419391 (+) True CI01000034_03407574_03419313
CI01000034_03396650_03402951.mRNA mRNA upstream 29712 3396650 ~ 3403134 (+) True CI01000034_03396650_03402951
CI01000034_03373181_03385238.mRNA mRNA upstream 46788 3372527 ~ 3386058 (+) True CI01000034_03373181_03385238
CI01000034_03358125_03363411.mRNA mRNA upstream 68810 3355709 ~ 3364036 (+) True CI01000034_03358125_03363411
CI01000034_03533995_03552021.mRNA mRNA downstream 96162 3533995 ~ 3552105 (+) True CI01000034_03533995_03552021
CI01000034_03556390_03566045.mRNA mRNA downstream 116792 3554625 ~ 3566525 (+) True CI01000034_03556390_03566045
CI01000034_03656686_03659087.mRNA mRNA downstream 218853 3656686 ~ 3659172 (+) True CI01000034_03656686_03659087
CI01000034_03670122_03684523.mRNA mRNA downstream 232110 3669943 ~ 3685216 (+) True CI01000034_03670122_03684523
CI01000034_03855726_03858565.mRNA mRNA downstream 417718 3855551 ~ 3859311 (+) False CI01000034_03855726_03858565
TU192920 other upstream 1095156 2317973 ~ 2337690 (+) True G169806
TU192663 other upstream 1701669 1726510 ~ 1726632 (+) True G169586
TU192378 other upstream 2121968 1250219 ~ 1310878 (+) True G169340
TU192449 other upstream 2239286 1150297 ~ 1193560 (+) True G169394
TU192400 other upstream 2313827 1103540 ~ 1119019 (+) True G169357
TU193699 other downstream 687267 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193723 other downstream 756805 4194638 ~ 4194993 (+) True G170522

Expression Profile