RNA id: TCONS_00001257


Basic Information

Item Value
RNA id TCONS_00001257
length 5209
RNA type mRNA
GC content 0.44
exon number 41
gene id XLOC_000767
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56274613 ~ 56320569 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtagtTTGGACTGTGAGCGCTGCTGGTATAAATGTGAGCGTCTGCAGGTTTACAGAAACACAGTCAGGATGGAGGTGAAGCTGCTGTTTCTCTCTGCTGTTCTTCTCTCCTCAGCGCTCCTCACACTGTGTGACCCGCTATATGTGCTGTCGGCTCCTAATCTGCTGAGAGTGGGTTCCTCTGAGAACGTGTTTGTGGAGGCGCAGGATTATTCTGGAGGACCCCTTAATGTGAGAATCTCTGTGAAGAACTTCCCAGCCAAGAATGTGGAGATGATGCAAAAAACAGTGACTCTAACCGGAGCAAAATACCAGAGTCTTACAGATATACAGATCCCTGGTGATAGAAACTACTTCTCTGATGATGAGAAGAAGCAGTATGTGTATCTGCAAGCTCACTTTCCCTCCGTGACTCTGGAGAAAGTGGTCATGGTGTCTTTTCAGTCTGGATATTTGTTTGTTCAGACGGACAAGCCCATCTACACGCCTGGCAGCAATGTTCATTACAGGATTTTTTCTATGACACCCAACTTGAAACCATTCAGTAAGCCCGGAATCACAGTGGATATCACGAATCCACAAGGCATCACGGTAGCATCAGACACGATATTTGCAGAAAAAGGTGTGAAATCTTCGATCTACAACATCCCTGAGGTTACTAGTTTGGGGATGTGGAAGGTGGTCACGCGGTATGCAAACACCCCTCAGAAGACGTTTACTGCAGAGTTTGAGGTTAAAGAATACGTTCTTCCAACATTTGAAGTGAAATTAAAAACCAGTAAATCTTTTTACTATGTGGGAGACAGCAAACCAAAGAACAACGAGGACGACAGTCTGACAGTTGACATGGAAGCCAAGTATCTGTTTGGAAAGAAGATGGATGGAAATGCGTTTGTAGTGTTTGGTGTGATGGACGGCGCGATGAAAACAAGTATTGTGAACTCTCTTCAAAAAGTTCAGgtttTCAATGGAGTAGGAACTGCAGAATTGACCAGGGAGATGATCACgaagacatttaaaaacataaaagatcTGGTTGGGAAGTCAATCTACGTTTCAGTCAACCTTTTAACCGAAAGTGGCAGTGAAATGGTGGAAGCAGAAAAGAGAGGCATTCAGATTGTGACGTCTCCGTACACCATCCATTACAAAAGAACATCACAGTTCTTCAAACCTGGAATGCCCCTGGGTGTCTCGGTTTATGTTACAAATCCTGATGAGACGCCTGCAGAAGATGTGGAAGTGGAGGTGCTGGTTGATGGAGTAGGAGGAGTCAACAGTAAAACCAAAGCCAATGGCATTGCGAAAGTGACAGTCAACACTAAGGCAGGAGTCTCTACATTGAAGATCACTGCAACGACCAGAGATCCTGAATTGGCCAATGAGCAGCAGGCGGATAAGACAATGATTGCTCAGGCCTACAAAACCAATCTTGGCTCCAAAAATTACCTGCATATCAACATTGAGTCAGCAGAGTTTGAGATTGGTGATCAAATGACAGTTTATCTGAACACTGGAGAAAGTCCAGGAGTCAAAGATCAAGATTTCACTTACATGATCTTGAGTAAAGGTCAGATTGTTCTAGCAGAAAGGTTTAAGAGGCAAGGACAAACTCTAGTCTCTCTGTCTCTACCTGTGACCAAAGACATGGTGCCGTCCTTCCGCTTCGTGGCTTATTACCATGTGGGCAAAGATGAGGTGGTGTCTGATTCAGTCTGGGTCGATGTGAAGGACACATGCATGGGAAAGCTCAAGGTCGAGGTGACAGAAAAGCAGAAATTCTATGAAACAGGAAATGAAGTCAATCTGCAAATAAGTGGAGATTTTGGAGCCCGAGTTGGTCTGGTGGTGGTTGACAAGGCTGTGCAAGTCCTTAACAAGAACAGACTCACTCAGTCGAAGATCTGGGATGTCATTGAGAAGCATGATACTGGCTGTACGGGAGGAGGTGGAAAAGACAGTATGGGGGTTTTCAGTGACGCTGGTTTGATGTTTGAGTCCGACCCTGCAGGAGGAACCAATACAAGAACAGAGCCCAAGTGTCCTGCCCCTCCAAAGAGAAAACGGAGATCTGAGAGTCTTCAGACAATCACTACAACTCTCGCTGgccaatacactgaaaaaatccGGCCATGCTGCTATGACGGGATGAGGAATAACAGAATTGGCTACACATGTGAACGGCGAGCATCATACGTCATAGATGGAGAAGAGTGTGTCAAGGCCTTCTTGCACTGCTGCAAAGAGGTGAAAAACCACAAAGAgactgaagaggaggagctgattcTGGCTCGTAAAGATGATGAAGAGACTTATGAAGAGGATTATGAAGACTATGATGACATTACATCACGCAAGCAGTTTCCTGAGAGCTGGCTTTGGGAGGAGTTTGATCTCTGTGACAAATGTTCAAAACCAAGCAAGAACAAAGTGACGTACCTGAAAGACTCTATTACTACCTGGCAGATCTTGGCAATCAGCCTCTCACCAACACACGGCATCTGTGTGGCAGAACCTGAGGAGATCGTCGTTTTTAAGAGTTTTTTCATTGACCTCAAAGTGCCTTACTCAGCTGTACGAGGTGAACAAGTGGAAATCAAGGCCATTATTCACAACTACACCCCCAAACACCTGAAGAAGGTTCGTGTGGAGTTTTTGGAGACAGCAGGTGTTTGCAGTGCTGCCAGTAAGAAAGGGAAATACAGAGCAACAGTAAATGTTGACAAGGACTCCAGCATAGCAGTTTCATTTGTGATCGTTCCAATGACACTGGAAAGTCAGCATATTGAGGTGAAAGCTTCAATATTAGATTATACAGATGGAGTTAGAAAGACCCTGAAGGTGGTGTCTGAAGGTGTGCTGACTAAATTCCAAAGCCAAAAACTGGAGCTCAATCCGGccaaaaaagGGGAGCAGCCCTTACTTCTTAGAGCTGGTATACCAGGAGATCAGGTTCCAGGCACACCCGTTCACTCGTACATCACAGTTACTGGTGAAGAAATCAGTCAGTCGATTGAGCATGCCATCAATGGAAGCTTCATGGGAGAACTTATCAAACGGCCAGGAGGATGTGGAGAGCAGAACATGGCTAAAATGACTTTGCCTGTTGTTGCTACTCATTATCTGGACAACACCAATCAGTGGGAATCTGTTGGCATTGACCGCCGTAAAGTTGCCATTAACCATATCAAAACAGGTTATGATGGGCAGCTAAAGTACCGTAAACCTGATGGATCTTACGCTATCTGGATTAACACGCCGAGTAGTACATGGCTGACAGCATATGTGGCTAAAGTCTTCGCCATGGCCAATGATTTTTTTGCTATAGAAGAAAATGTGATCTGCAGCGCCCTGAAGTGGCTGGTTATGCACAAACAACTACCAGATGGCTCTTTTAAAGAGGATGCACCTGTATATGACAAAAGTATAATGGGTGGGATAGAAGGCCAAAACACTGATGTCTCTCTGACAGCATTTGTCTTGATTGCCATGCAAGAGGGCAAAGAGATCTGTGGGGGAACAGTTGGTAGTCTGCATGAAAGCATGAGGAAGGCTGTTGCTTTCTTGAAAGATCAGCTTCCAAAACTGACCAATCCTTATGCAGTTGCTTTGACGTCCTACGCCCTGGCCAACGCTGACAGTCTTAATAAAGCAATCTTGATGATGCATTCCACTAAAGTAAACGATGAAAGGTTCTGGAATGTCCCTGAACGGCAATATTACTCAATAGAGGCGACGGCCTATGCTGTGCTGGCACTCGTGAAGGCCAAAGACTATGATACAGCAGGAGAGGCAGTGCATTGGCTGGCCAAACAAAAGTCTAGTCATGGTGGTTATGACACTACACAGGTGACCATCATGGTTTTCCAGGCTGTGGCAGAGTACCATGCGCAAACGCAAGACTTAAATAACTTTGACCTGAATGTGGAGCTGGTTGTGCCAGGAAGAAGAAAAACTGACAGATGGACCATTCAAAGAAGTAATGTGCATCTTGCGCGGTCAGGCAATGTGGATTTGAATAAGGACTTCACTGTGATTGCTAAAGGAACCGGATCAGCCATTCTCTCAGTTCTGACGCTGTACTACGCCAGACCGTTTGAGAAGAAGACTGACTGTACTTTCTTTGATCTGAGTGTCAAATTGGATAAAATCCCTGAAACAAAACCAGGAACCAATGGAACGTACAACTTCATCCTGGATTTCTTctacaaaaacaaaaaaaatgacgcCACCATGACGATTCTGGACATTGGCTTGCCAACAGGATTTGATATCGATGAAGCTGATCTTAAACAGTTGTCCACAGGGAAGGAGAGATACATTCAGAAATATGAAAAGAATAAAGTGCTCTCAGAGCGAGGATCCCTCATCATCTACTTAAACAAGGTTTCTCATGAAGTATCAGAAAAACTTGTCTTCAGAATGCACAAGACCTTTAATGTGGCTTTGCTTCAACCTGCTTCTGTCACCATATACGAGTATTACTCACCCGATGCCCGCTGTAAAAAGTACTACCACCCTGAAAGAGAAGATTCCGCCCTATACAGACTGTGTAAAggagacctgtgtgtgtgtgctgaagAAAACTGCAGTTACCAAAAGAAAAACCATGTTGATGAATCTAAGCGCTTGATTAAAGCCTGTGAACCCCATCTGGATTACATTTATAAAGCGAAATTAGTGAAGATGGACCTGAAACAAGACTCCGATATCTATCACATGAAGGTGGAGAAGACGGTGAAAGAAGGAACTGATACGGATGTTGAAGGGAAAGTGAAACAATTTTTGGCTCGTCCCAGTTGCCGAGTGAGTTTAGGACTGGTTGAAGGAAAGTCGTATCTCATCATGGGAAACTCTGTTGATCTGCCGACCCTTGGGGGAAGTCTGCAGTACGTCATAGGAGAGCAGACCTGGATTGAATACTGGCCTACAAGTGATGAAAGTAAATCTGCTGAACACAGAGATCGCTACATCGGCATGACTGCAGTCGAGAATATGTTTACCACAGGAGGATGTTTGACATAACTGCATTACACCTGTTTGTATTTTACAACACCATCTTTCCTATTTCCAAATAAATTGTGTGTAATGTCGTTTGAGCCTAATTTcttgtaattaattattaaaatcaagactgtatcaaatgaaaatgaTTGTTTTAGATTCCTGCCTAATAAATCATGGTGTTACATGTTGTAACCTACAAAA

Function

GO:

id name namespace
GO:0006956 complement activation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-37 Predicted to enable endopeptidase inhibitor activity. Predicted to act upstream of or within complement activation. Predicted to be located in extracellular space. Is expressed in several structures, including gill; heart; liver; pleuroperitoneal region; and post-vent region. Human ortholog(s) of this gene implicated in several diseases, including COVID-19; complement deficiency (multiple); macular degeneration (multiple); paroxysmal nocturnal hemoglobinuria; and sickle cell anemia. Orthologous to human C3 (complement C3).

Ensembl:

ensembl_id ENSDART00000052683

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003235 lncRNA upstream 545487 55714918 ~ 55729126 (+) True XLOC_000760
TCONS_00003236 lncRNA upstream 553198 55717578 ~ 55721415 (+) True XLOC_000761
TCONS_00003234 lncRNA upstream 595166 55678912 ~ 55679447 (+) True XLOC_000758
TCONS_00003233 lncRNA upstream 607253 55666862 ~ 55667360 (+) True XLOC_000757
TCONS_00003231 lncRNA upstream 797478 55456363 ~ 55477135 (+) False XLOC_000745
TCONS_00003237 lncRNA downstream 96069 56416638 ~ 56556305 (+) True XLOC_000768
TCONS_00003238 lncRNA downstream 240657 56561226 ~ 56604170 (+) False XLOC_000772
TCONS_00003239 lncRNA downstream 240684 56561253 ~ 56604352 (+) True XLOC_000772
TCONS_00003240 lncRNA downstream 242258 56562827 ~ 56564352 (+) True XLOC_000773
TCONS_00003241 lncRNA downstream 248945 56569514 ~ 56603810 (+) True XLOC_000774
TCONS_00001256 mRNA upstream 7882 56229674 ~ 56266731 (+) True XLOC_000766
TCONS_00001255 mRNA upstream 89685 56180416 ~ 56184928 (+) True XLOC_000765
TCONS_00001251 mRNA upstream 497459 55752593 ~ 55777154 (+) False XLOC_000764
TCONS_00001258 mRNA downstream 126538 56447107 ~ 56458037 (+) True XLOC_000769
TCONS_00001259 mRNA downstream 142925 56463494 ~ 56468601 (+) True XLOC_000770
TCONS_00001260 mRNA downstream 182137 56502706 ~ 56523047 (+) False XLOC_000771
TCONS_00001261 mRNA downstream 200267 56520836 ~ 56523047 (+) False XLOC_000771
TCONS_00001262 mRNA downstream 200267 56520836 ~ 56529192 (+) True XLOC_000771
TCONS_00001233 other upstream 977362 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 1146034 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 2088457 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 2213403 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 2886732 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001304 other downstream 1027329 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 1839582 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 2810723 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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