RNA id: CI01000034_04090497_04095923.mRNA


Basic Information

Item Value
RNA id CI01000034_04090497_04095923.mRNA
length 1604
RNA type mRNA
GC content 0.48
exon number 9
gene id CI01000034_04090497_04095923
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4090232 ~ 4095923 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACCTGATGTCATGGCGGTCTCTCTATTATCCTGTTGCTGGGTTTGGCTGCACTTGTGTGGAAACTGACTGCACATATGAATATGCCAAGTTTGAAGAGAAGAGGTGGGGACGACTGTCATATCCCAGTCAGGCACAGATAATGATCATATCAACAACATTCCATGTCTCTCTCTATCACAGGCTTAGTTTGACACATTCCTGCATATACACTGCAGCTGCCTCTGAAACTTTTGTTGCCATAGATACAAGACATGCACTTGCTAGAGTTTCACCGAACTCTTCTGGAACTGTTGTTTCCATGGCAGCAGCTGCACTAGAGGTGGCGATATTTCCCGACGAGCAGCAGAGCTGGGCGGAGACACTCACACTGAACAACCATGTGCATCCGGTTCGCATGATCATGGCGGCACCTGCTGTTGCTTCTGAGTCTTCCTCCGTAGAAAACATGCCAGAAACTGCTAATGGACCCACGGAGAATTCCGCTGAGGCTCAGAAACGACCGCAGTTCGGCACTCGCTTCCTCACAGACCCGCGACAGGTGTTTCAGCACAACGCGTGGGATAATGTGGAGTGGTCAGCAGAACAGGAGGAGGCCGCCCAGAAAAAAGTGCAGGAAAACAGTCAACCTCTCCCAGCAGAAAAACAAGAGGAATTTGACAGCAGGGCTAATGAGTACTGGAACGATTTCTACACCATTCACGAGAACCGCTTCTTCAAGGATCGCCACTGGCTGTTCACAGAGTTCCCTGAGCTGGCGCCTCAACAGAAGGTTCCACAGGACACCACTGCACATCTGTTAAATGGTGAAGAGTCTCCCTCTTCACACACAGACTCTACATTTCCTGGAGCCTCTGCATCCTATCGCATTCTGGAGTCAAATCCTGAGTATGACTTGTCACGGTGTCACGCATTCGTCCATGATATGAGTGATGCGTCTGCAGAGTATCCAATGCCAGACCACAGTCTGGACGTCATTGTCCTCATATTTGTTCTCTCTGCCCTGCATCCAGAGAAGATGCAGAACTCCATTAATAGATTAGCACGATTGCTGAAACCTGGAGGAGTGTTGTTATTAAGAGACTATGGTCGCTATGACATGGCACAGCTTCGTTTCAAAAAAGGGAGGTGCTTGTCTGAAAATTTCTATGTTAGAGGGGATGGAACACGCGTCTACTTTTTCACACAAGATGAGCTGCATGATCTGTTCTCCAGTGCCGGCTTGGAGAAGGTACAGAACTTGGTGGACCGACGCTTACAGGTGAACAGAGGAAAGCAGCTGACAATGTACAGAGTCTGGGTACAGTGCAAGTATCGCAAGGTCCTGGCGCCTCCTTAGAATCAAGGCTGCTTATTTGGAGAGATCGAGAACATCTGGGCTGAACTATGAGAATGTTGCTGTGTTCAGGACAGGTTGCAGTAACTTAAAAGATTGCAGTGCTGACAGCACTGAGTGAAATGGAGACTATCTTATGCAGCCTACTTGGGAATGTTGATGGAGGACATGAATTCCCAACTTCCCATGATGCACCTGAGGACCTTAAACTATTTGTTTATCATACTGAGCGATGTTTTTAAGGACTTTTTTTAATCTTATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195748 lncRNA downstream 26071 4063892 ~ 4064161 (-) True G172297
TU195817 lncRNA downstream 43092 4046675 ~ 4047140 (-) True G172366
TU195749 lncRNA downstream 73538 4012500 ~ 4016694 (-) True G172298
TU195767 lncRNA downstream 152766 3934545 ~ 3937466 (-) True G172316
TU195754 lncRNA downstream 157615 3931628 ~ 3932617 (-) True G172303
TU195829 lncRNA upstream 20560 4116483 ~ 4116934 (-) True G172378
TU195830 lncRNA upstream 21056 4116979 ~ 4117214 (-) True G172379
TU195835 lncRNA upstream 29196 4125119 ~ 4126846 (-) True G172384
TU195849 lncRNA upstream 105890 4201813 ~ 4202052 (-) True G172398
TU195853 lncRNA upstream 116531 4212454 ~ 4212802 (-) True G172402
CI01000034_04087755_04088054.mRNA mRNA downstream 1468 4087563 ~ 4088764 (-) True CI01000034_04087755_04088054
CI01000034_04065210_04081772.mRNA mRNA downstream 8460 4064519 ~ 4081772 (-) True CI01000034_04065210_04081772
CI01000034_04019323_04045212.mRNA mRNA downstream 45020 4019240 ~ 4045212 (-) True CI01000034_04019323_04045212
CI01000034_03956763_03960891.mRNA mRNA downstream 129341 3956763 ~ 3960891 (-) True CI01000034_03956763_03960891
CI01000034_03915853_03921269.mRNA mRNA downstream 168963 3915751 ~ 3921269 (-) True CI01000034_03915853_03921269
CI01000034_04101415_04114654.mRNA mRNA upstream 4699 4100622 ~ 4114654 (-) True CI01000034_04101415_04114654
CI01000034_04154954_04164874.mRNA mRNA upstream 58728 4154651 ~ 4164874 (-) True CI01000034_04154954_04164874
CI01000034_04165535_04172272.mRNA mRNA upstream 69450 4165373 ~ 4172272 (-) False CI01000034_04165535_04172272
CI01000034_04174469_04189564.mRNA mRNA upstream 78493 4174416 ~ 4189564 (-) True CI01000034_04174469_04189564
CI01000034_04216451_04218876.mRNA mRNA upstream 120311 4216234 ~ 4221881 (-) False CI01000034_04216451_04218876
TU195584 other downstream 692419 3391513 ~ 3397813 (-) False G172151
TU195571 other downstream 692584 3391689 ~ 3397648 (-) False G172151
TU195573 other downstream 692584 3391762 ~ 3397648 (-) False G172151
TU195577 other downstream 692584 3391762 ~ 3397648 (-) False G172151
TU195428 other downstream 853617 3234963 ~ 3236615 (-) False G172016
TU195735 other upstream 70576 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195733 other upstream 120289 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU196079 other upstream 897037 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 1693109 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 1693333 5789256 ~ 5789738 (-) True G172800

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049863 False 1355 mRNA 0.46 8 NC_007114.7 19665338 ~ 19682811 (+)