RNA id: CI01000034_04154954_04164874.mRNA


Basic Information

Item Value
RNA id CI01000034_04154954_04164874.mRNA
length 1452
RNA type mRNA
GC content 0.45
exon number 7
gene id CI01000034_04154954_04164874
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4154651 ~ 4164874 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCAAAGAAGAGGACGCGATACGAGAGTTCGTTGTGAGACAACTGCACAAGTGTTCGGACTTAAGTACACTGACTTTAGGCATTTTGCGGAGGAGATACCTGGAGAGAGTGGGTAGAGAATCGCTCAGCCCCAAGGACAGGCAGTTGATGAAGAAAATTGTCGAGGAGGAACTTTTGAAGATGCAGGCCAGCAGTGATGATGAGCCTCTTATTAATATTGTGAATACGTCAAAGAGCCAGAACAAAAGGAAAAGGGTGGATGATGACAACGAAGATGATGATGGGGATGAAGAGAATAAAATGGTGGGAAAGACAAAGAGATCACGGCTGGGGGAGTCTTCTCCAGAAAAGAAAAAGAAAGAGGATTCAGACAGTGAGGAGGAAACCAGTGATAAACCAGCAAAAAGCGAGTCTGCGAGTGATTCTGAGGATGATAAAGTGAAGAGCAAAGCGAAGACACAGAGCAAAAGAAAAGATGTCAGAAAAAAGAAGCCAGTAGAGAGGGATTTTGTGAAAGAAGTGGAGAGAGAAGTGTTTGGGAGCAGCTCTGAAAGTGAGGAGGAGAAAAACGAGGACACAAAAAACAAGAGCAACTCTGAAAATGAAAGCCCTGGAGACAGTGAAGAGGAGAAAGATAAAAGAGAGGATGCTGCTCATTTATCCTCTAAAGAGACTGAGAAAAATGGTAAGAATCCCTCAGAGGATGAAGAGAATAAGGCTGTGTCCAGGCTGAAGCGCTACATCGCCCTCTGTGGTGTGAGACGGAACTACAAGAAGCTGTTAGACGGCTGCCGATCAGTAAAGGCAAAGGTGGCTGTGCTGAAAAAAGAGCTGGAGGAGCTGGGTGTGGAAGGTCAGCCCTCCATAGAGAAGTGTAAGAAAGCTCGACTAAAGAGAGAAGAAGCACAGGAACTGGCTGAGCTGGATGTCAGCAACATCATCACCACTCAGGGACGTCCCAAAAGGAGAGCAGCAGCAGCAGCATGGCCCCCCACACAAAATGCCTCTCCTCCCCCGTCTGGCTATAAACGTGTTGTGGACTCGGACTCAGATAGCGGGGAGAGCCACACAAACACGGGCCACAAGAGAGGAGCAGCCTGGGGCAACCTGCAGGGAATCATCAGTGACGATGGGGAGAGTGACTAGATGGAAAGTGCCTTGCAATCCTGCAGTCTGTTCCAGCATTATACAGTGCATTCCATAAGTTCACCTGCTCTCAGTTTTACAACAAACTGTTTAAAAACTGTTAAACCTGCTCTAATGAATCAGTCTATACGTTTCAAAGGAATTTTATGTGTACATCCTCTATGATTGTAGGATGTGTTTGGATTTCCTTACAATATATTTGTTCTCTTCTTTCATGTGTTTTATAACTGTTAGTTTGTACTTTGAAGCATATTTAAGTGTTCCAAATGTGTACAATGAGGTTCATGCAGCTTTGAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195835 lncRNA downstream 27805 4125119 ~ 4126846 (-) True G172384
TU195830 lncRNA downstream 37437 4116979 ~ 4117214 (-) True G172379
TU195829 lncRNA downstream 37717 4116483 ~ 4116934 (-) True G172378
TU195748 lncRNA downstream 90490 4063892 ~ 4064161 (-) True G172297
TU195817 lncRNA downstream 107511 4046675 ~ 4047140 (-) True G172366
TU195849 lncRNA upstream 36939 4201813 ~ 4202052 (-) True G172398
TU195853 lncRNA upstream 47580 4212454 ~ 4212802 (-) True G172402
TU195863 lncRNA upstream 93681 4258555 ~ 4258786 (-) True G172411
TU195864 lncRNA upstream 94392 4259266 ~ 4259613 (-) True G172412
TU195865 lncRNA upstream 96096 4260970 ~ 4261263 (-) True G172413
CI01000034_04101415_04114654.mRNA mRNA downstream 39997 4100622 ~ 4114654 (-) True CI01000034_04101415_04114654
CI01000034_04090497_04095923.mRNA mRNA downstream 58728 4090232 ~ 4095923 (-) True CI01000034_04090497_04095923
CI01000034_04087755_04088054.mRNA mRNA downstream 65887 4087563 ~ 4088764 (-) True CI01000034_04087755_04088054
CI01000034_04065210_04081772.mRNA mRNA downstream 72879 4064519 ~ 4081772 (-) True CI01000034_04065210_04081772
CI01000034_04019323_04045212.mRNA mRNA downstream 109439 4019240 ~ 4045212 (-) True CI01000034_04019323_04045212
CI01000034_04165535_04172272.mRNA mRNA upstream 499 4165373 ~ 4172272 (-) False CI01000034_04165535_04172272
CI01000034_04174469_04189564.mRNA mRNA upstream 9542 4174416 ~ 4189564 (-) True CI01000034_04174469_04189564
CI01000034_04216451_04218876.mRNA mRNA upstream 51360 4216234 ~ 4221881 (-) False CI01000034_04216451_04218876
CI01000034_04239062_04242494.mRNA mRNA upstream 73897 4238771 ~ 4242640 (-) True CI01000034_04239062_04242494
CI01000034_04318823_04319740.mRNA mRNA upstream 153670 4318544 ~ 4320127 (-) True CI01000034_04318823_04319740
TU195584 other downstream 756838 3391513 ~ 3397813 (-) False G172151
TU195571 other downstream 757003 3391689 ~ 3397648 (-) False G172151
TU195573 other downstream 757003 3391762 ~ 3397648 (-) False G172151
TU195577 other downstream 757003 3391762 ~ 3397648 (-) False G172151
TU195428 other downstream 918036 3234963 ~ 3236615 (-) False G172016
TU195735 other upstream 1625 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195733 other upstream 51338 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU196079 other upstream 828086 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 1624158 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 1624382 5789256 ~ 5789738 (-) True G172800

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051126 True 1948 mRNA 0.47 8 NC_007114.7 15193521 ~ 15210491 (-)
bowfin (Amia calva) AMCG00012292 True 2134 mRNA 0.58 9 CM030138.1 14596158 ~ 14602841 (-)