RNA id: CI01000034_04216451_04218876.mRNA



Basic Information


Item Value
RNA id CI01000034_04216451_04218876.mRNA
length 3594
RNA type mRNA
GC content 0.36
exon number 4
gene id CI01000034_04216451_04218876
representative False

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4216212 ~ 4221881 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATAAAATATATAATGTTTAATATCTCGGAAATTCAGTCAGCACAAATGTTCGTTTTGCAGTGTAAACTAGAACAATGCACAAATTCATCCATTTGTTCATTATTCCATTATATGAAGCGCTGACTCGAGTTCACAGCATTTTTAATTTTTTTTTTTTTTTAATGCAACAATAACAAAAACAAGACAAGATAGTAAAACAATAATGAACAAATATAAGCAATTAAACACATTAGGGTTACAAAACAAAACGGCTTGCACAGAAGTTTGAAGATACCTTTTAACATAGATTGAAAAGTCAAAAAAACAGCAATGGGAAGCGATTATCTGAAACGTCAGAGAGGGGGCGTTCCCTATCCGCGGGAAATCCAAACCCATTCGTGTTGCGCTCATAGAAAATAACTAAACACGGAACTCTAGGAAACAATGGTATGGAATGGAATTCGAATGGAATTCTATATGGAATTCAACAACACAGGTCAGACTGGTTCTGCTTTATCCACATGTGTATTCTTAAACTATAATGGCTTTCTTACGCGGACTGTTTTCTGCTTCCTGTACCTACTGTATTTAATAACAAGATGGACGACATCATTCATGTCATAGTTAACTTATAGTCGCGATTTCAAGCGATTATATGCAGTATGTGTAAATGGATAAACAATTAGCTATCATAAGACATTGGTGAAGAAACTTTTGAGCACTCGCTATGACAATAAAAGACGTTTTAACGAATGTTGATTGAAGCGAGTATAACCTTGTATAGCAACCCGAGATCAGAGCTATATTTGATTACACAAAATATGTCGCTTTCTAATAATTATACTAATTTAAGTATTTCTTACCACAGATAGGACTACCATAATTGAACGCCTATGGGGGTTTCTAAGAAGAGCCTGGACGTTCCTGTGCCGCGGTGGACATAATAACTCTGGTGTGTAACTACATTATTCTTGAATACATTTAAATAATAAAAGTGTATAAACAAACTGAAAGCATTGGGAAGTCAGACAATGTGCTTATCCAATTCATAAACAGAGATTCCGTTGTCAGTTGAAGAAACAGCGCCACCTCTTGGTTTGAGCACTGTACGACCATGGAATTACAGTGAGGATGGAGTTATAATTAGAACGGTTTAGGTGAGACACTTTCATTTACTAAATTCAGATCAAAGTGAAATGATCTATTTTATCAATTTTGAGTTATGCAAATTGATGACATCATATTGAAGTGTTCCATTGAACAATTCTAATGGCCACTCTATTCATTCCATACAGAACACTTGGATTAAGATGAAGAAACTACTTCATAAATTTCTCACTTCAGAGATGGAGGATTAGCCCCCTTGTAATCATCTTCGTCCCAGCCACTTATATCACAAATTCGTGAGAGGAGTCGATGTCAGGAGGTGGGGCAGAGTTATGGTGCTCTCGCCTCAAGTTGTGCACAAGGAGTTTTGGACCTCTGTTGGGTTTGTTTTGGTCCATGCAAGGCATCAGTAGAGCATAATCTAGTCTATTTGATGTGGGAGTCCTGCCAAGTTGTTGGCCAGCCCTAAGATATAATTTGGCCAACAGTGAAAATTAGATTTCTGTAGTCAAGTGATACAATCATTCATTCACTCTTCATTGTAAGACAGATTATCAGGGCTGATGAGTGTGATATTCCTTTTATACCAAAATTCTAATTGTAAGTAACCAGTTAGTAAGTACATTTCTTCTCTTCCAAAGAAAATAGTTTCAAAAGAAGCCAAAGCATCCAGCTTTTTGCATGTTACCAAACAATGCACACTGAATAATATGGAGGACAGTAACAAAGTATATTTACATTTATCTGTACGTTATTGGAGTATTTTCATTTTACTTAACTTCAAGGCATAATATCTTACTTTTGCTTCACTGCATTTCATAAATATTGTGCCTTGCTCCTCATTCATGTGTAGACATGGTGGTGATGTCTGATAGGCAGTGCTGGGTACATTACTTACAAGTTCTTTAGAATTTATGAGCGAAAAAAATGTCTGTAGCCTATTCTTTTAAACTAAAGTTGCAGCTATCTCATAATCCCATCACACAAGCCGGTATTTTGTTGTTGTTCCGTCTCTTTAGTTTCCTTTTTTTACTGTAAAACAATGGCCCAGGCAAGTGTTAACACCTTGTGGAACAACTGATTAGTGCAAAACAAATTCATTGTGCACGACATTTGCATCATGGACCCTCGAATACACGTACAAACAGAAGTAAACTTTGGGCTTTAGGCCTAAGCATTACATCACGAGTTTTCATGGGGTTTCATGAAAGAATTGCAGGGGTTTATGATCAAATTTAAATAAAAAATTAAATCATAAAAAAATCTAATTAAACTAATTAACTCATTTTCAAATAAAAGCAAATAAAAAAAAAAAATACCTGAACAGTAAAAATAGAAGTACGTTACTGGAGAAGTACTGGAGTGTGTGCATTTACACAAAATGTAAGTGGAATAATTTTTTAGAAAGGAAATTTTAAAAGAGAAATAAAATATGAATATAGCGAATCAGTAAATTATGAATAATCTACTGCCATTGTGTGAATAATAATATGTAAAGATGTAATCCATAAAAAGTAACTGTAACCTGATTATGAGCATTTAAAAACACTTAATTTTTTTAATCTGATTAGATAATCCAGATTACACTACCCAGCACTGCTTATAGGAATGAATTATTCTTTTGAGATTATTCTTTTGATGATCATGTTAAATTGGTTCACAAATCACAATGAACAATTCATTCATGAAGTAGAGTGATCCAGCTGTAATCAGGTCAGAGAGGGTCTCTAACAACTCACCAAATTGGTCATGTCCAACTCAAAATGGACAAGTGACCCTCAACTTGAGCTTGCAGAGGATTTGACTGAAAGTGGAAAAAGTTACCAAAGCCAAATGTTAGTATTGTTTTTGTTTTTTGTTTTTGTTTTTACATAAAATTCATATTTATGTTATGCATGTTTTTGAGCTAAATCTGTCTAATGAAATGCTTGAATGTGTATATACGTCAGAAAGAGCTTCATAATGGTAACTGTCCCTATATGACTGCGTATAAGCTGGTGACAGTTCATTTTCGCTGGTGGGGTCTGCAGGGACGTGTGGAGAACTTCATTCATAAGCAGGAGAAAAGGCTCTTCACTAATTTCCACCGGCAGCTCTTTTGTTGGCTGGACCGCTGGGTGGACCTTAGTATGGATGACATTCGTAGGATGGAGGAAGAGACACAGAGGGAGCTGGACCAGGAATTCTTGTGGGAACTTGTATATGCCTCAAGAGGTAGGATCATTGGTGTCGGATTAAAGAAACTGAGATTAAAGGAAAACGGCTCGAAGCATAACGGTTTTCTTGTTTAGTTATGGTGGTCTTTTGGTTCGGTTCGGTTCTGCACTGATTGCAGTGTGGATGTCGAGAGCATTGAACTGATACGGTTTCATTTTTAAACTGAGTGTAAGAGCCTTGAAACCCCTCCCACATTTGGCTGACATGCTACAGGCCACACCCCTCTGTTCGGGTGGGGATGGTCTGAATTTTTGGAAAATGAAGTTCAATTTACAATACTGAAACAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU195853 lncRNA downstream 3432 4212454 ~ 4212802 (-) True G172402
TU195849 lncRNA downstream 14182 4201813 ~ 4202052 (-) True G172398
TU195835 lncRNA downstream 89388 4125119 ~ 4126846 (-) True G172384
TU195830 lncRNA downstream 99020 4116979 ~ 4117214 (-) True G172379
TU195829 lncRNA downstream 99300 4116483 ~ 4116934 (-) True G172378
TU195863 lncRNA upstream 36674 4258555 ~ 4258786 (-) True G172411
TU195864 lncRNA upstream 37385 4259266 ~ 4259613 (-) True G172412
TU195865 lncRNA upstream 39089 4260970 ~ 4261263 (-) True G172413
TU195866 lncRNA upstream 41445 4263326 ~ 4263835 (-) True G172414
TU195867 lncRNA upstream 43202 4265083 ~ 4271495 (-) True G172415
CI01000034_04174469_04189564.mRNA mRNA downstream 26670 4174416 ~ 4189564 (-) True CI01000034_04174469_04189564
CI01000034_04165535_04172272.mRNA mRNA downstream 43962 4165373 ~ 4172272 (-) False CI01000034_04165535_04172272
CI01000034_04154954_04164874.mRNA mRNA downstream 51360 4154651 ~ 4164874 (-) True CI01000034_04154954_04164874
CI01000034_04101415_04114654.mRNA mRNA downstream 101580 4100622 ~ 4114654 (-) True CI01000034_04101415_04114654
CI01000034_04090497_04095923.mRNA mRNA downstream 120311 4090232 ~ 4095923 (-) True CI01000034_04090497_04095923
CI01000034_04239062_04242494.mRNA mRNA upstream 16890 4238771 ~ 4242640 (-) True CI01000034_04239062_04242494
CI01000034_04318823_04319740.mRNA mRNA upstream 96663 4318544 ~ 4320127 (-) True CI01000034_04318823_04319740
CI01000034_04350907_04363668.mRNA mRNA upstream 128725 4350606 ~ 4363683 (-) True CI01000034_04350907_04363668
CI01000034_04370706_04374491.mRNA mRNA upstream 148745 4370626 ~ 4375413 (-) True CI01000034_04370706_04374491
CI01000034_04376314_04386958.mRNA mRNA upstream 154433 4376314 ~ 4386958 (-) True CI01000034_04376314_04386958
TU195735 other downstream 44064 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195584 other downstream 818421 3391513 ~ 3397813 (-) False G172151
TU196079 other upstream 771079 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 1567151 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 1567375 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 1575689 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 1575689 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile