RNA id: CI01000034_04823597_04824920.mRNA


Basic Information

Item Value
RNA id CI01000034_04823597_04824920.mRNA
length 1268
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000034_04823597_04824920
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4823321 ~ 4825135 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGGCATGTTAAATTTTAATCCCCTTCAGCATATTTTCCTTACCACTGGTCAACATTTTACATTTATTATTAGTCTTTTCAATCATCAATTGCCCTCAAAGGTCACTGAGGAATTTAATGCTTGCTTTTTTGTCACTCACATTCAAATGATGAGTAGATGCCCTCCAAGATATTAGGACACAGCCATCAGAGAGATATTCGTGCCTCAGAAAGAATGACTGAAAATAAAGTAGAACTTAACAACATGGAGAAAGCTCTGATGGATAAGATGGGACAACATACTGTGAGAGAGCCCAACCTATTTGAGCGGGTTTTTCAGCCGTGTGTAGCTGAGCTGGTGGGGACCACCTTCTTTGTGTTCATCGGATGTGTGTCTGTCATTGAAAATGTGGAGGATGCCGGCAGACTCCAACCTGCTCTGGCTCATGGTCTCGCAGTGGCGGTACTGATTTCATGTATGGCAGAGATCAGTGGTTCTCATTTCAATCCATCATTCACCATAGCTGTCTACCTCTGCGGTGGAATGAAGCTGAAAATGGTGCCACCGTACCTGATCTCTCAGCTTACTGGAGGTTTACTTGGTGCAGTCATGGCCAAGGGAATGACCTCAAATGAGAACTATGCAAAAGCTCAAGGTGCGGCATTTACGCTTCTCCAGGCTGATGACTATATTGTGAAGGCATTATTTGGAGAAATTGCCATGACGTGTCTAGTTACCATGGTGGTCTTACTGGGTGCAGTTAATGCCAAGAGCAAAAGTCCTTTGGTTCCATTTTTGGTGGGCTGCACAGTCATTATTAATGTGCTAGTGGGGGGTGATGTGTCTGGTACTTGTCTGAATCCTGCAAGAGTATTTGGTCCTGCAGTGCTGACCAACTACTGGACTCACCACTGGATCTACTGGGTAGGGCCCATTACTGGCGGCCTTATTGCTGCGGCATTAGTCAGGTTATTGCTCGGAGACAACAACACCCGCGTACTGATGAAGTAACATTCAATACATCTTTCAAACAGACTTTTGATTTTGTTAATTCTCCTTTTCTTAGGTGCACAAGAATTTAACTTATTTTTAACTATATGATGCTTAGCCAATTCAATTTTCTTTGCCAGCTACATTAATGCAAGCTCAAAATAGTAATAATCATGCTCTGTGAATACGGAAATATGGGGAAAGGTATTAATATTTGAATTTTACATTTTAAATTGGGAAATTTTGAAATTGAAAATGTAGGTTATAGCAGTGTTAATTCTAATATAATCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196024 lncRNA downstream 200934 4622142 ~ 4622387 (-) True G172551
TU196015 lncRNA downstream 215105 4607979 ~ 4608216 (-) True G172542
TU196014 lncRNA downstream 215545 4607523 ~ 4607776 (-) True G172541
TU196012 lncRNA downstream 216874 4606073 ~ 4606447 (-) True G172539
TU196008 lncRNA downstream 222857 4600248 ~ 4600464 (-) True G172535
TU196112 lncRNA upstream 16130 4841265 ~ 4841496 (-) True G172626
TU196115 lncRNA upstream 18319 4843454 ~ 4845428 (-) True G172627
TU196124 lncRNA upstream 122746 4947881 ~ 4948092 (-) True G172633
TU196095 lncRNA upstream 159743 4984878 ~ 4986139 (-) True G172609
TU196082 lncRNA upstream 162204 4987339 ~ 4992240 (-) True G172596
CI01000034_04710539_04725888.mRNA mRNA downstream 97433 4709413 ~ 4725888 (-) True CI01000034_04710539_04725888
CI01000034_04690669_04706837.mRNA mRNA downstream 116362 4690487 ~ 4706959 (-) True CI01000034_04690669_04706837
CI01000034_04652096_04678983.mRNA mRNA downstream 144284 4651934 ~ 4679037 (-) True CI01000034_04652096_04678983
CI01000034_04630595_04640739.mRNA mRNA downstream 182334 4630541 ~ 4640987 (-) True CI01000034_04630595_04640739
CI01000034_04466151_04467388.mRNA mRNA downstream 355841 4465852 ~ 4467480 (-) True CI01000034_04466151_04467388
CI01000034_04870434_04878415.mRNA mRNA upstream 45226 4870361 ~ 4878415 (-) True CI01000034_04870434_04878415
CI01000034_04887739_04917230.mRNA mRNA upstream 62582 4887717 ~ 4917230 (-) True CI01000034_04887739_04917230
CI01000034_04921458_04934523.mRNA mRNA upstream 96034 4921169 ~ 4934523 (-) True CI01000034_04921458_04934523
CI01000034_04951993_04959847.mRNA mRNA upstream 126395 4951530 ~ 4959847 (-) True CI01000034_04951993_04959847
CI01000034_04978655_04981311.mRNA mRNA upstream 152939 4978074 ~ 4981311 (-) True CI01000034_04978655_04981311
TU195733 other downstream 605579 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 651151 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195571 other downstream 1425673 3391689 ~ 3397648 (-) False G172151
TU196079 other upstream 167825 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 963897 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 964121 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 972435 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 972435 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051210 True 998 mRNA 0.49 5 NC_007114.7 18572279 ~ 18575868 (-)