RNA id: CI01000034_04951993_04959847.mRNA


Basic Information

Item Value
RNA id CI01000034_04951993_04959847.mRNA
length 2568
RNA type mRNA
GC content 0.42
exon number 13
gene id CI01000034_04951993_04959847
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4951530 ~ 4959847 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTTCGCCTTGGTCAAGTGCGTTTGCCAGCCATCTGTTATCATAAATTATCGATGCAAATAAGCTACTGTGAGTATATCAGGTTAAACAGGTTGAACTTGTCGAGGTTTCAGCCGCACAAATGCACTTGCAGCACCAAGAAACTACACGCGGAAAGACACAAACATGAACAGTCAAAAGTTAATGAGGTTAATCATCGGTGGCTTGGTGATTGTTGCCATGATGAAAATATTCTTAAGCCTCAGGTGAGGATTGCAGTTCTCAAAGGTTTTCATGTACACATATGTGTCTATGCACCTTTCAAACCAGGCTTCATTGTCCCAAAGAAGCTTGTAACTGCAGTTTATTTATTTTCTATTTATAGCTCAAGCAAAGGCGCAAGTGGAAAGACACACCAAGTCATACAAGGTGGTAAGTTCTGGGCTAGCCAGCGTATTCCACAGCTGAATTTGGATAAAAATCAGGAGGATCCTGTCAAAATAGAACATGCAGACCCAGAGGTTGACCCAGAGGTTGACCCAGAAGTTCACCCAGAGGTTCAGCCAGAGAAAAAAGACACGATTCAATCAAAGGAAGAGGAGTTGGAACCAGAAATTCCTGACAATACACCGAAAGATCCACTAAAGATTGTGCACTTGGATCTGAAAGGTGCACCACCCAAAGTCAAATATCTCAGAGAGATATTCCCTCTACTGTCATCTCTGGGTGCTAATGGGATATTGCTGGAATATGAGGATATGTTTCCCTATGAGGGGAAACTCGCAATTCTCAAATCAAGCTTTGCATACAGTCCGGAAGATATAGAGGAAATTAAGTCACTGGCCAAACAGCACAAGCTTGAACTAATTCCTCTGGTGCAGTTTGTGTTAAAACACGAGAAGTATTTCAGATTGAGAGAAGTGGAAACGTTTCCCAATAGTATAAACCCTCTGGCCCCAGGAAGCATTGACCTTGTTCAAGACATGTTAACGCAAGTTATGAACAAGCACCCGGAAGCAGAGTGGTTCCACATTGGTGCTGACGAGGTGCGTGGGCTGGGCGAGAGCGAAGATTCCAAGCGCTGGTTGGAAGCCAACAATGGAGACATGGCAAAGCTGTTCTTCAATCATGTGACCGCAGTGGGGAGATTTATGACCAATCTGAAGAGAGGAATCAAGCTGATCTTGTGGGATGACATGTTTAGGAAGCTCAGCTCCGACTCTATTAAAGCATCGGGATTGCAAGATCTCGCATCGCCCATGATCTGGACGTACAGCCCAAACATGGATGTGAAAGCGATCGGTAATTATATCGCTAAGTATGAGGAGGCTGGATTTCATCACGTGTGGTTTGCTAGCGCTTTTAAAGGAGCCTCTGGAATTGACCAGATGTGGACTCCAATTGATCACCATTTAAAAAACCACCTACAGTGGCAACAAGTCATTACGTCAATGCCGCAGTACAAGTCTGTGAGATTTCAAGGCATTGTGCTGGCTGGCTGGCAGAGTCTAGTAAATGAATCTGCATTGTATATCAACAACAGTAGACTATTATTGTTAATGAAAAACAACGTATGTTTAAGGTATGAGCATCACACTGTGCTGTGTGAGCTTCTCCCTGTGGCCATCCCTTCACTGGCTGTCTGTCTTCAGACACTGAAATATGGTTCATTTGATGCCAAGGCACAGAGTGAGGTACAACGCATCCTTGGCTGTGAAATTGAGCTAAGCAACAATGAGTGTAAGGGTGTGTCCTTTCCTGGCTCAGATGTTTATGAAATGGTGAAGAAGATCAAAAACAACCTTGACAGCTCAGTCAAAAAGATCATGGACAGCTACCACGTCAGGGGATCATTCAGTTCTTATAATCGCAAACATAACTTTGCAAACCCACGAAATCTTGGATTTTTCAAAGATGATCTGAAAAAGTTGATGAATGAATGGGATTCCTTTTTACTATCTTTCCGGCAAAGTATGGAGGCTATCTTCTACCCAGACACATTAGAGGAGTGGTTGGAAGAGAACGTCAACGAACACATAGAAAGACTTGGTGAAATGGTGGTTGACGTAGAACGAATCATTGCACTCAATGGGAAGCCAAAGGCAGATCCCGTAAAAACTAGGTGAAACAGACAACCAGACCAACAGGAAGGACATTCCAAAATGTGACTTTCAAACCTGTTGTGCTCAGTAATGGGTGTTTTTTTCCATCTCAGGAATCTTGCTTATTTCTTGAAGGCCTCAATGGAAGTGATAACACTAAAAAAAATGCAGTACTCTAAAAAAAAAACCAAAAAAAAACCCTCTAATTACACTATGTATGCACTTCTTGAAGAAGTGGACTCTCTACACTGTGCATTGATGCTGTTTTCGTACTTGAGTTAATGTAAATGATTTACCTCTGCAGTTAAATTGGTACTACTAATTTTTTTTATTATCATAAATGTCTAGGGATCAAACTTCATCTCTTTAACATGCAAGGTGTATTTTGTACATTTGTGTCATTTGGGAAGCCCGAATATTGTGCAATTATGCTCAAAGGCAAAATGTGCAATCCTTAAGAAATGTTATAATTGAGTGCCTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196124 lncRNA downstream 3438 4947881 ~ 4948092 (-) True G172633
TU196115 lncRNA downstream 106102 4843454 ~ 4845428 (-) True G172627
TU196112 lncRNA downstream 110034 4841265 ~ 4841496 (-) True G172626
TU196024 lncRNA downstream 329143 4622142 ~ 4622387 (-) True G172551
TU196015 lncRNA downstream 343314 4607979 ~ 4608216 (-) True G172542
TU196095 lncRNA upstream 25031 4984878 ~ 4986139 (-) True G172609
TU196082 lncRNA upstream 27492 4987339 ~ 4992240 (-) True G172596
TU196134 lncRNA upstream 92553 5052400 ~ 5052726 (-) True G172643
TU196135 lncRNA upstream 93279 5053126 ~ 5053360 (-) True G172644
TU196137 lncRNA upstream 93860 5053707 ~ 5054597 (-) True G172645
CI01000034_04921458_04934523.mRNA mRNA downstream 17007 4921169 ~ 4934523 (-) True CI01000034_04921458_04934523
CI01000034_04887739_04917230.mRNA mRNA downstream 34300 4887717 ~ 4917230 (-) True CI01000034_04887739_04917230
CI01000034_04870434_04878415.mRNA mRNA downstream 73115 4870361 ~ 4878415 (-) True CI01000034_04870434_04878415
CI01000034_04823597_04824920.mRNA mRNA downstream 126395 4823321 ~ 4825135 (-) True CI01000034_04823597_04824920
CI01000034_04710539_04725888.mRNA mRNA downstream 225642 4709413 ~ 4725888 (-) True CI01000034_04710539_04725888
CI01000034_04978655_04981311.mRNA mRNA upstream 18227 4978074 ~ 4981311 (-) True CI01000034_04978655_04981311
CI01000034_04988799_04990480.mRNA mRNA upstream 28834 4988681 ~ 4990480 (-) False CI01000034_04988799_04990480
CI01000034_04997343_04999344.mRNA mRNA upstream 37471 4997318 ~ 4999344 (-) True CI01000034_04997343_04999344
CI01000034_05006303_05007855.mRNA mRNA upstream 46270 5006117 ~ 5007861 (-) True CI01000034_05006303_05007855
CI01000034_05093584_05096564.mRNA mRNA upstream 133215 5093062 ~ 5096564 (-) True CI01000034_05093584_05096564
TU195733 other downstream 733788 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 779360 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195571 other downstream 1553882 3391689 ~ 3397648 (-) False G172151
TU196079 other upstream 33113 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 829185 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 829409 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 837723 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 837723 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051216 False 1988 mRNA 0.41 11 NC_007114.7 18744296 ~ 18756076 (-)