RNA id: CI01000034_05189944_05197158.mRNA


Basic Information

Item Value
RNA id CI01000034_05189944_05197158.mRNA
length 1030
RNA type mRNA
GC content 0.41
exon number 7
gene id CI01000034_05189944_05197158
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5189884 ~ 5197531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAAAAAAAACTATCAAATTTCAATTACACTAACAATTATTTAATAAACTAAGACTTGACAATAAATTAACAATGTGCAATAACATTTCACAGTGCAATAATGAATGCACCTACACTCTAAACCCGGATTTTGTGTCACTGAAACATTTTAAGTGGTCATTACTTATTCTTTGTTGTTTTTGAAAAAGCATTGTTATTACTAAATCAAATTAGTTGTTTGCACTAATCAGACGAAATATCGGAAGCACTGATCATGTTAAGCTGTGATAACTCGGGAATGTTACGCTTTTGTAAGGGAGGGAGGGGCCTATTGAAACAGGTGACTGACAGTGAGCAGTGCGCGCTGTTTGAAGAGTCCGCTCGTCCTGGCCTATGCTGCATGCTAAACATGGATTTTTGAAAGAAACTTTAAACGTGGTTTGCCTTAGGAATCCAGAAATCCCTGAGAATTTAATGTGGGACTCCGATGGTGATCACTCATTTTGCCACCTTGACTTTGGGATCCCCCTTGTTGAGCATGAAGGTGCTGTGCTCCCATCTTCTCTTCATCTCAATCCAGCTTCAATTAAGATCATCATTGAGGGAGAAGTTGGGACTGGAAGGGCTATGACAGAGACACACCACAGTGCTTTCTTCCTCTTAATAGCTGTGTCTTTTCCTGTTTTCTTGGCTTTTTACCACTCACTTGCTGTTGCTGGAGCACACTGCTATTTGCCAATGCTTGGGCGTCTCTACTGGGCTGTATTCCCCAACAGAACCATGTCAAACAGCTATTTGAAAACTCTGGTCTTCATTGTGCATATTAGTCTCTACTGGGTCAAGCTGTATTCCCCAACAGAACCATGGCAAACCGGCGCTCAAGCTCTGACTAGAATCAGCATTCACGTGCACAATAATGTGTTTCGCGCTGTGGCGCTGACAACAATCCGGTGGTGGCCAGAATCACGCAGCAGAGGAATGGAAAGTTGACAAGCCATTAAAAAAGTATTGACTTAAGAGCCACTTATATTTTCAAATATTTTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196224 lncRNA downstream 28757 5160849 ~ 5161127 (-) True G172719
TU196221 lncRNA downstream 34199 5155486 ~ 5155685 (-) True G172716
TU196219 lncRNA downstream 37189 5152029 ~ 5152695 (-) True G172714
TU196211 lncRNA downstream 89399 5100281 ~ 5100485 (-) True G172706
TU196137 lncRNA downstream 135287 5053707 ~ 5054597 (-) True G172645
TU196185 lncRNA upstream 14420 5211951 ~ 5217002 (-) True G172680
TU196276 lncRNA upstream 314997 5512528 ~ 5512796 (-) True G172771
TU196201 lncRNA upstream 331368 5528899 ~ 5535870 (-) True G172696
TU196197 lncRNA upstream 342354 5539885 ~ 5557975 (-) True G172692
TU196281 lncRNA upstream 379912 5577443 ~ 5577774 (-) True G172776
CI01000034_05176199_05177220.mRNA mRNA downstream 12664 5175966 ~ 5177220 (-) False CI01000034_05176199_05177220
CI01000034_05167889_05175190.mRNA mRNA downstream 14572 5167889 ~ 5175312 (-) True CI01000034_05167889_05175190
CI01000034_05147520_05150640.mRNA mRNA downstream 39244 5147006 ~ 5150640 (-) True CI01000034_05147520_05150640
CI01000034_05093584_05096564.mRNA mRNA downstream 93320 5093062 ~ 5096564 (-) True CI01000034_05093584_05096564
CI01000034_05006303_05007855.mRNA mRNA downstream 182023 5006117 ~ 5007861 (-) True CI01000034_05006303_05007855
CI01000034_05236100_05264059.mRNA mRNA upstream 37601 5235132 ~ 5264546 (-) True CI01000034_05236100_05264059
CI01000034_05269689_05276880.mRNA mRNA upstream 70694 5268225 ~ 5277297 (-) True CI01000034_05269689_05276880
CI01000034_05281481_05288563.mRNA mRNA upstream 83826 5281357 ~ 5288580 (-) True CI01000034_05281481_05288563
CI01000034_05302438_05326245.mRNA mRNA upstream 104757 5302288 ~ 5326245 (-) True CI01000034_05302438_05326245
CI01000034_05356235_05375111.mRNA mRNA upstream 158368 5355899 ~ 5375453 (-) True CI01000034_05356235_05375111
TU196079 other downstream 194941 4992960 ~ 4994943 (-) True G172593
TU195733 other downstream 972142 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 1017714 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195573 other downstream 1792236 3391762 ~ 3397648 (-) False G172151
TU196307 other upstream 591501 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 591725 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 600039 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 600039 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile