RNA id: CI01000034_05356235_05375111.mRNA



Basic Information


Item Value
RNA id CI01000034_05356235_05375111.mRNA
length 1281
RNA type mRNA
GC content 0.42
exon number 4
gene id CI01000034_05356235_05375111
representative True

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5355899 ~ 5375453 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTAAGTATTGATGGCTTTACACTTAGTAGACAGAGCAAAGCTGCTTAAGTGGCTATTCAAGAGAATCAATTCATGCCTGTCGTTTTTGTATTGTTATAGTTGAGTACGATACCTAAAGATACCGTAACAGATTTCCGCAGATATTCATATTTCTGCTTTGTAGGGTTTAAGATTACTTCAGAGTCAATATCAGTAAAGAGTATTGTGCCTTCCGCTGCATTCTCTTGAGACGAATAACCATTTTTCTACCCTAGTTTATTTCTGAATATAATTTCTTGCAGGTTAATTGGCCCCTCTACTGAGTTTTCTGGATAATTTTCCCCAGTGATCTGTAGTTCATAATGCTCACATTTGATTCAGCAGTCCCCAGACGTCCTCTCCTTGATCTCACGGACACTCACTTATCACTGAGACACATGAAGCAGAGCCCGATCTCTTCCCCCACTGGAAAATATGGCACTGTCAGAATGAAGCGTCCATTTAGTCCTGTTGAAGACGGATCGAACAGACTGACTGAACAGACTGGGCATGAGGGTGTGACCTCTGATGGGGTGGAGTTTACCAGACAGGACGCCCCATCTATAAACCCTCGTCCGAAGCGGGAGCGCAAACACAGGTCGTACACACTCTGTGAAGTGTGCAACATTCAGCTGAACTCCGCAGCACAAGCACAGATACACTACAATGGCAAAACACACCAGAAAAGACTCAAACACATAAACAACAGCAACACAGCAGTTTTTCTGTTTGACAGCCTGTCTTATCAGTCAGATTCGCTTGGACCTGTGCAGGTGTTGAGGAGGCAGATGGAGGAGGCTAGCATGGCCGGACACTGTAATAGACTCAACGCCACTGGAGGAGTAAATCACTTCCTCCTTCACCTGCCCATCACCTCGTGTAATACGCCCTACTGCACTCTGGGAAACTGTAGGCTTGAAGACTAATTGCTGAATTATTCAAATGATTCAGGAACAGTTTTGACTTTTGAGAACTTTTGACAAGTACTTAATGTTCTCTACATTTTGCTAATGCAATTGTGTGGCTACAGGTCCTGAGAGTTTTTTTTTTTTTTTTGTCTGGGGTTTTAATTTAAAGGCACAGTTCACCCTAAAATTAACATTTTGAACAATTATTTGATTTACCCTTATGTCGTTTCAAATCTCTATGCTATCTTTTTTCCCCTGTGGCACATAAAGACATTTTAAAGAATATTTCCATATTTCCAATGGAACGAAAAACACTTCTGAAGTCATGCATTCCGCTACAGCTCACAAATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU196185 lncRNA downstream 138897 5211951 ~ 5217002 (-) True G172680
TU196196 lncRNA downstream 141847 5212828 ~ 5214052 (-) True G172691
TU196224 lncRNA downstream 194772 5160849 ~ 5161127 (-) True G172719
TU196221 lncRNA downstream 200214 5155486 ~ 5155685 (-) True G172716
TU196219 lncRNA downstream 203204 5152029 ~ 5152695 (-) True G172714
TU196276 lncRNA upstream 137075 5512528 ~ 5512796 (-) True G172771
TU196201 lncRNA upstream 153446 5528899 ~ 5535870 (-) True G172696
TU196197 lncRNA upstream 164432 5539885 ~ 5557975 (-) True G172692
TU196281 lncRNA upstream 201990 5577443 ~ 5577774 (-) True G172776
TU196287 lncRNA upstream 350928 5726381 ~ 5765635 (-) True G172782
CI01000034_05302438_05326245.mRNA mRNA downstream 29654 5302288 ~ 5326245 (-) True CI01000034_05302438_05326245
CI01000034_05281481_05288563.mRNA mRNA downstream 67319 5281357 ~ 5288580 (-) True CI01000034_05281481_05288563
CI01000034_05269689_05276880.mRNA mRNA downstream 78602 5268225 ~ 5277297 (-) True CI01000034_05269689_05276880
CI01000034_05236100_05264059.mRNA mRNA downstream 91353 5235132 ~ 5264546 (-) True CI01000034_05236100_05264059
CI01000034_05189944_05197158.mRNA mRNA downstream 158368 5189884 ~ 5197531 (-) True CI01000034_05189944_05197158
CI01000034_05419465_05426380.mRNA mRNA upstream 43207 5418660 ~ 5426380 (-) True CI01000034_05419465_05426380
CI01000034_05428767_05438942.mRNA mRNA upstream 52076 5427529 ~ 5439213 (-) True CI01000034_05428767_05438942
CI01000034_05441613_05448148.mRNA mRNA upstream 66085 5441538 ~ 5448148 (-) True CI01000034_05441613_05448148
CI01000034_05462429_05465076.mRNA mRNA upstream 86927 5462380 ~ 5465076 (-) True CI01000034_05462429_05465076
CI01000034_05467255_05480455.mRNA mRNA upstream 91802 5467255 ~ 5480455 (-) True CI01000034_05467255_05480455
TU196079 other downstream 360956 4992960 ~ 4994943 (-) True G172593
TU195733 other downstream 1138157 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 1183729 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195573 other downstream 1958251 3391762 ~ 3397648 (-) False G172151
TU196307 other upstream 413579 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 413803 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 422117 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 422117 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile