RNA id: CI01000034_05462429_05465076.mRNA



Basic Information


Item Value
RNA id CI01000034_05462429_05465076.mRNA
length 1441
RNA type mRNA
GC content 0.52
exon number 4
gene id CI01000034_05462429_05465076
representative True

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5462380 ~ 5465076 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAACGCTTTGACTATTCCAAGCTGCCCTTTATTGTGGAGGCAGAGCAAGAGGAGGATGCTGGACAGAACCAGGGCAGGAAGCCCCTGCTGTCTGGCTTGGGCGGTCTTTCATCTCAGCCTAATCTGAGTACCATGTTAGGGGAGGAGTTTCGGCACCTTAACATGCTTCGTCTCTGCAAATCGCCTATTAAAAGCTCCCGGGTACAAAGCCCTGCTTCTCAGATGCCACTTCATGAGGATCCGTCTGCAGGTGCAGTTCCTGCCCCAAGAATAGACAAGAGCTCCTGCCACAGACCAGCCAAACTGCTCATTCCTACCCTGAACTGTGTCAGCCCTCTGGACCTGAGCCCACGGGTTGTCGATGGCATTGAGGATAACGAACATGCTTTTCACTTCAATGTTGAGCACAGTGAGCCATCTCCTAACACAGAGGTCAAAGACCCATTTCAGGTTGGCGCAAACCTTCTCCTTGAGACAGAGGAAGTCAGACAGAGTCTCCGTCAACTCAATACAGAGATGAACCACCTGAACCAGGAAGTGTCCTCACTGACCAAGGAGCTCCACGAAATGATGCAATTCCTGCATACACATGTGACCCCACCGCACTTCACTTCCTCTTTTACTCCCTACAGCTCTTTCAACTGTCATACATCACCCAACTGCACCAACGTGGCCTCCTCTACTGCCGACTGGCCATCAAGGCTGGCCTTTAACATGTCGGCCGGTCCTTGCCTGCAGCCGGATCCCTCTCTGAGAGATTCTTTAGGATCCAGGCACACGTGCATTTGCAGCATCAGCCATGCCCAGGAAAGAGGCTCCGTCTTGGGGCAGGAAGGGGACATAGAGCTCCTCAATCAAGCCCCCAGCTCTCACTCAACCTATTTTCCATGCTGCCCTGACCAGGAAAGGATTGCTACCTTGGGCGTAGATAGTCAGCCAAACCCATATCAGACTTCTAAGACCACACCAAACTCTCCCTATCTAGGACATCATGTTCCCCGCACTGGTGGGTCACTCCTGGGATTGGCGGCAACCTTTCCGTCCAGTGGTTTGGTGCCTCAGGTTAGGACTGGGGGTCCCAGCAACACATTGTCTGTGTGCACCCATAACATCCAGAGTCAGTCACATCCATCTCTAAACGCGCAGATGACCTCTGACCTGCACTCCAGGGCGCCCACACCCATCCATTTATCCGTTACACCAACCGGCCCATCAGAGCCTCTCATAGCAGTCAGTTCACATTTGCATTCTGGGATTTGTAGTTCCAGCTTGCTACATTTCCCTACAGGCCCAAGACAGAACGATCTGGTGGGATCAAGTCCTGTTCACACACTTGAGCCCATCGTTTCGTCCACTGGAGAGAAACAGGTGAAACCAGGACCTGCTGAGTAACGACACATTGATTGAGCCAACGCTGAGCAGGAGTGATGGACATATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU196185 lncRNA downstream 245378 5211951 ~ 5217002 (-) True G172680
TU196196 lncRNA downstream 248328 5212828 ~ 5214052 (-) True G172691
TU196224 lncRNA downstream 301253 5160849 ~ 5161127 (-) True G172719
TU196221 lncRNA downstream 306695 5155486 ~ 5155685 (-) True G172716
TU196219 lncRNA downstream 309685 5152029 ~ 5152695 (-) True G172714
TU196276 lncRNA upstream 47452 5512528 ~ 5512796 (-) True G172771
TU196201 lncRNA upstream 63823 5528899 ~ 5535870 (-) True G172696
TU196197 lncRNA upstream 74809 5539885 ~ 5557975 (-) True G172692
TU196281 lncRNA upstream 112367 5577443 ~ 5577774 (-) True G172776
TU196287 lncRNA upstream 261305 5726381 ~ 5765635 (-) True G172782
CI01000034_05441613_05448148.mRNA mRNA downstream 14232 5441538 ~ 5448148 (-) True CI01000034_05441613_05448148
CI01000034_05428767_05438942.mRNA mRNA downstream 23167 5427529 ~ 5439213 (-) True CI01000034_05428767_05438942
CI01000034_05419465_05426380.mRNA mRNA downstream 36000 5418660 ~ 5426380 (-) True CI01000034_05419465_05426380
CI01000034_05356235_05375111.mRNA mRNA downstream 86927 5355899 ~ 5375453 (-) True CI01000034_05356235_05375111
CI01000034_05302438_05326245.mRNA mRNA downstream 136135 5302288 ~ 5326245 (-) True CI01000034_05302438_05326245
CI01000034_05467255_05480455.mRNA mRNA upstream 2179 5467255 ~ 5480455 (-) True CI01000034_05467255_05480455
CI01000034_05491347_05493196.mRNA mRNA upstream 25979 5491055 ~ 5493255 (-) True CI01000034_05491347_05493196
CI01000034_05509621_05566772.mRNA mRNA upstream 44545 5509621 ~ 5566772 (-) True CI01000034_05509621_05566772
CI01000034_05601190_05607136.mRNA mRNA upstream 136056 5601132 ~ 5607169 (-) True CI01000034_05601190_05607136
CI01000034_05681798_05699059.mRNA mRNA upstream 216417 5681493 ~ 5699120 (-) True CI01000034_05681798_05699059
TU196079 other downstream 467437 4992960 ~ 4994943 (-) True G172593
TU195733 other downstream 1244638 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 1290210 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195573 other downstream 2064732 3391762 ~ 3397648 (-) False G172151
TU196307 other upstream 323956 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 324180 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 332494 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 332494 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile