RNA id: CI01000034_05491347_05493196.mRNA


Basic Information

Item Value
RNA id CI01000034_05491347_05493196.mRNA
length 816
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000034_05491347_05493196
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5491055 ~ 5493255 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCATCGACTTTAAACATCAAGTCCATCAGATACATGACATTTGTCTACAACAAGACTCATGGACTGCACAGCCAAGAGAGTTCAACTGCTCCTCTTCATGGCGCTTTTGGCACACCTGGCGCGAGACGCTGAGGGCGTGGCCACCTGCTGCACGAGCTCTTCTAGATCCTGCAAAATGTACGAGTTTCTGTGTCGCGAGGGACGCCGAAACGATACTTCCGTGGCCAGGCATTTCGGTCGCTTTAATAACGACGCAGCCGTCGGGATTCTAACACTTGGCAAACGTAAAGTGGGCGAGAGACGTGTCGAAGACCGCCTGCAGCAACTCCTGCACGGCTCACGGAATCAAGCAGCGGGAATCCTAACTATGGGAAAGAGATTCGAGGATGGCGGGCATCTGCCGCTCGTGCACGAGGGAGGGACAGGGACCGAGAGCGCGCCCGTGAGACTCGGACTGGAGCGTCCGATGAAATATCTGATGCCCACGGTACTAGAAGATTTGGACGCTTATGAAAAACGATGACACTTGTCGCTTTTTAAAACCACATTAGAGATGTTCATTCGTGACGTCAATTGCCAAAACAGAAAGCTATTCTTAATGAGTATTTTGAAATAGCGTTTTTGATTTAAGTAAAAACTGTTTGTGGTTATCATTACTTGAAAGAGACTTTAACGGGTTTTTTTTTTCGAATATAAATCACATGTAGTCATACCTCAGATGTTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTATGTGTGTGTGTGTGTTTTATAAAAGATTGTACATAATTTTACGTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196185 lncRNA downstream 274053 5211951 ~ 5217002 (-) True G172680
TU196196 lncRNA downstream 277003 5212828 ~ 5214052 (-) True G172691
TU196224 lncRNA downstream 329928 5160849 ~ 5161127 (-) True G172719
TU196221 lncRNA downstream 335370 5155486 ~ 5155685 (-) True G172716
TU196219 lncRNA downstream 338360 5152029 ~ 5152695 (-) True G172714
TU196276 lncRNA upstream 19273 5512528 ~ 5512796 (-) True G172771
TU196201 lncRNA upstream 35644 5528899 ~ 5535870 (-) True G172696
TU196197 lncRNA upstream 46630 5539885 ~ 5557975 (-) True G172692
TU196281 lncRNA upstream 84188 5577443 ~ 5577774 (-) True G172776
TU196287 lncRNA upstream 233126 5726381 ~ 5765635 (-) True G172782
CI01000034_05467255_05480455.mRNA mRNA downstream 10600 5467255 ~ 5480455 (-) True CI01000034_05467255_05480455
CI01000034_05462429_05465076.mRNA mRNA downstream 25979 5462380 ~ 5465076 (-) True CI01000034_05462429_05465076
CI01000034_05441613_05448148.mRNA mRNA downstream 42907 5441538 ~ 5448148 (-) True CI01000034_05441613_05448148
CI01000034_05428767_05438942.mRNA mRNA downstream 51842 5427529 ~ 5439213 (-) True CI01000034_05428767_05438942
CI01000034_05419465_05426380.mRNA mRNA downstream 64675 5418660 ~ 5426380 (-) True CI01000034_05419465_05426380
CI01000034_05509621_05566772.mRNA mRNA upstream 16366 5509621 ~ 5566772 (-) True CI01000034_05509621_05566772
CI01000034_05601190_05607136.mRNA mRNA upstream 107877 5601132 ~ 5607169 (-) True CI01000034_05601190_05607136
CI01000034_05681798_05699059.mRNA mRNA upstream 188238 5681493 ~ 5699120 (-) True CI01000034_05681798_05699059
CI01000034_05721684_05742044.mRNA mRNA upstream 228308 5721563 ~ 5742044 (-) True CI01000034_05721684_05742044
CI01000034_05744195_05777951.mRNA mRNA upstream 250769 5744024 ~ 5777951 (-) True CI01000034_05744195_05777951
TU196079 other downstream 496112 4992960 ~ 4994943 (-) True G172593
TU195733 other downstream 1273313 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 1318885 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195573 other downstream 2093407 3391762 ~ 3397648 (-) False G172151
TU196307 other upstream 295777 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 296001 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 304315 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 304315 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile