RNA id: TU196179


Basic Information

Item Value
RNA id TU196179
length 736
RNA type TUCP
GC content 0.52
exon number 5
gene id CI01000034_05795972_05811363
representative False

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5795835 ~ 5811781 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGCTGCTTGGACGTAGGTGTACGGGTGATCTGTTGCGGTTCTCAACAAGTTCTTACTTCAGAGAACGCAAGGCACTATCCCGCAGCAGGACTGTAACGGCAGACAACACAATGATGAACAGGAACGGAGTGGTCACAAAGATTCGCACGCGGATAAGGAACGACCCCTTCAAGAACAACTATGACCTGGTCGGCAGAGAGCTTGGCAGGGGCAAGTTTGCAGTAGTGAAGAAGTGTGTGGAGAAAACTACTGGCAAGGAGCATGCTGCTAAGTTTCTGAGGAAAAGGCGAAAGGGTCAGGACTGCCGCAGTGACATTCTGAACGAGATCGCGGTGCTGGAGTCAGCTGAGGCGAATCCCTATGTGGTGGCACTGCACGAGGTCTACGAGACTACCACGGAGATCATCCTCGTATTAGAGTGTGCTGCCGGAGGTGAAATTTTTAACCAGTGTGTTGCCGATAACGACGAGGCCTTCACAGAGAAAGACGTCATCCGATTGGCCAGGCAGATTCTGATGGGCGTGGCCTGTCTCCATCAAAACAACGTAGTTCATTTAGACCTTAAGCCTCAGAACATCCTGTTGACGAGCGCTCAGCCTCTGGGTGACATCCGTATTGTCGATTTCGGTTTATCTCGGCGGGTGGACAGTGTGACGGAGGTACGGGAGATCCTAGGCACTCCCGAGTATGTGGGTGAGTCGGACATCTCTCATTTGCAAACCTCAAACCCTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196306 lncRNA downstream 8042 5789256 ~ 5789528 (-) False G172800
TU196287 lncRNA downstream 31935 5726381 ~ 5765635 (-) True G172782
TU196281 lncRNA downstream 219796 5577443 ~ 5577774 (-) True G172776
TU196197 lncRNA downstream 239595 5539885 ~ 5557975 (-) True G172692
TU196201 lncRNA downstream 261700 5528899 ~ 5535870 (-) True G172696
TU196355 lncRNA upstream 65416 5876731 ~ 5882670 (-) True G172845
CI01000034_05744195_05777951.mRNA mRNA downstream 19619 5744024 ~ 5777951 (-) True CI01000034_05744195_05777951
CI01000034_05721684_05742044.mRNA mRNA downstream 55526 5721563 ~ 5742044 (-) True CI01000034_05721684_05742044
CI01000034_05681798_05699059.mRNA mRNA downstream 98450 5681493 ~ 5699120 (-) True CI01000034_05681798_05699059
CI01000034_05601190_05607136.mRNA mRNA downstream 190401 5601132 ~ 5607169 (-) True CI01000034_05601190_05607136
CI01000034_05509621_05566772.mRNA mRNA downstream 230798 5509621 ~ 5566772 (-) True CI01000034_05509621_05566772
CI01000034_05833575_05834462.mRNA mRNA upstream 22088 5833403 ~ 5835139 (-) True CI01000034_05833575_05834462
CI01000034_05843208_05844043.mRNA mRNA upstream 31864 5843179 ~ 5844043 (-) True CI01000034_05843208_05844043
CI01000034_05846112_05848878.mRNA mRNA upstream 33786 5845101 ~ 5848878 (-) True CI01000034_05846112_05848878
CI01000034_05853721_05866514.mRNA mRNA upstream 42406 5853721 ~ 5866514 (-) True CI01000034_05853721_05866514
CI01000034_05884735_05888543.mRNA mRNA upstream 72591 5883906 ~ 5888543 (-) True CI01000034_05884735_05888543
TU196308 other downstream 7832 5789256 ~ 5789738 (-) True G172800
TU196307 other downstream 8042 5789032 ~ 5789528 (-) False G172800
TU196079 other downstream 802627 4992960 ~ 4994943 (-) True G172593
TU195733 other downstream 1579828 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 1625400 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272

Expression Profile