RNA id: TU192023


Basic Information

Item Value
RNA id TU192023
length 930
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G169052
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 101049 ~ 102040 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACTTTATTCACAAATGCCCAATGTCCAAAACCCTTTCTTTGTATAAGGATTTACGTAACGAACTTGCTCTTGAAGCCACTTAATGCTGTGAAAAATGTAAACGGCACATATAGACTATTGTAAAATATTATGAATCTGTATGTTGCCTGTTTTATAATATTGTTTTCTTTAGTTCTATGTTGCTTTACAGTTGTTGACGGTGTCACACAGTAAATAAAAATAGAGCGCATTGTGAAAAAATACAATATCCCACATATTGTTCTTGAGGTTATACTGCACATTTCGGCAAACGTAACAGGTTTCCACACAGTGTATATACTGCATACTGCAGAAAAATATGTTAGCTAGCATGCCATTCTGATCCAAAATGCCTGCAACAAAATCTTCCAAGCGTTTTTTTCTGTTATGCTAATTATTGGCAAGTGTTAAATGAAAGTCTAAGTGCTTCCAAAGTGTTAAATTACATATCCAAGTAACAGACAAACACATTATTGTAGTGTAAACATGACATTGAAATGTGCAGACTGCAGGACGTTTTGCAAAAATTGTGCAATCAAGTTGACACTATTTCAGCATAACTCCAGCCCACATTCACAGTCTATGCACAGCATGTCGGTTCATAGTTCAGCAGGAAGACATGGCCTCTTGAGGTTACATGTATTTTAGACAACAGAGAAGTGGCAAAAAGAGGAAATGTACAAACAATAAAAGCCTCAGAGAGGTATAAGGTTTTAGTTTGTATCATGACTCAAGCACCTATATCATGAATTTGAGTCATTATGTCATTGTTCATTGCCACAGAAGGTGTTGATTGGTAGAGTGAGAGTCTTGTTCAGGTATTTGTTCAGTGATTCAACTCCCTCTCCAAAACTGTACTTGGACTTGGTACTCGGCTGATGGCAGTATCCCGGGTCCAAGCATGGAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192077 lncRNA upstream 29083 66609 ~ 71966 (+) True G169087
TU192069 lncRNA upstream 56413 44301 ~ 44636 (+) True G169083
TU192045 lncRNA upstream 57890 14185 ~ 43159 (+) False G169064
TU192046 lncRNA upstream 57890 14185 ~ 43159 (+) False G169064
TU192044 lncRNA upstream 57890 33504 ~ 43159 (+) True G169064
TU192114 lncRNA downstream 94352 196392 ~ 196748 (+) True G169117
TU192180 lncRNA downstream 450895 552935 ~ 553203 (+) True G169170
TU192182 lncRNA downstream 453147 555187 ~ 556623 (+) False G169172
TU192185 lncRNA downstream 453147 555187 ~ 555909 (+) False G169172
TU192186 lncRNA downstream 453147 555187 ~ 555756 (+) False G169172
CI01000034_00123919_00185433.mRNA mRNA downstream 21879 123919 ~ 185433 (+) True CI01000034_00123919_00185433
CI01000034_00229261_00311362.mRNA mRNA downstream 127221 229261 ~ 311958 (+) True CI01000034_00229261_00311362
CI01000034_00393749_00410314.mRNA mRNA downstream 291620 393660 ~ 410338 (+) True CI01000034_00393749_00410314
CI01000034_00422322_00453621.mRNA mRNA downstream 319435 421475 ~ 453644 (+) True CI01000034_00422322_00453621
CI01000034_00455762_00459788.mRNA mRNA downstream 353105 455145 ~ 459927 (+) True CI01000034_00455762_00459788
TU192195 other downstream 540957 645451 ~ 646410 (+) True G169178
TU192338 other downstream 867221 969261 ~ 969921 (+) True G169309
TU192400 other downstream 1001500 1103540 ~ 1119019 (+) True G169357
TU192449 other downstream 1048257 1150297 ~ 1193560 (+) True G169394
TU192378 other downstream 1148179 1250219 ~ 1310878 (+) True G169340

Expression Profile