RNA id: TU194495


Basic Information

Item Value
RNA id TU194495
length 242
lncRNA type intronic
GC content 0.38
exon number 2
gene id G171206
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 183024 ~ 183365 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAACATCAAAAGGATAAACAATGCAGATTTATTTTTACAGTCATCTTTGATCATATTTACCAAGGGTGCCAATAATTCTGACCACAACTGTATCTATCATCCATTCATTGTTCATTCCATTGTTCCATCCATCCATCCATCCATCCATCGTTCTATCCATCCATCCATTGTTCAATCCATCATTCTATCCATCCATCCATCCATCCATCCATCGTTCTATCCATCCATCCATCCATCCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194417 lncRNA downstream 138925 43738 ~ 44099 (-) True G171136
TU194412 lncRNA downstream 139776 23190 ~ 43248 (-) True G171131
TU194427 lncRNA downstream 170139 11750 ~ 12885 (-) False G171146
TU194577 lncRNA upstream 107213 290578 ~ 335778 (-) True G171272
TU194632 lncRNA upstream 163484 346849 ~ 351155 (-) True G171324
TU194657 lncRNA upstream 214349 397714 ~ 399839 (-) True G171339
TU194660 lncRNA upstream 228828 412193 ~ 412427 (-) True G171340
TU194661 lncRNA upstream 229307 412672 ~ 413037 (-) True G171341
CI01000034_00101894_00115404.mRNA mRNA downstream 67620 101052 ~ 115404 (-) True CI01000034_00101894_00115404
CI01000034_00097095_00098729.mRNA mRNA downstream 83901 97026 ~ 99123 (-) True CI01000034_00097095_00098729
CI01000034_00071780_00082031.mRNA mRNA downstream 100993 71544 ~ 82031 (-) True CI01000034_00071780_00082031
CI01000034_00051315_00059354.mRNA mRNA downstream 123670 50716 ~ 59354 (-) True CI01000034_00051315_00059354
CI01000034_00361018_00362033.mRNA mRNA upstream 177549 360914 ~ 362033 (-) True CI01000034_00361018_00362033
CI01000034_00368808_00390623.mRNA mRNA upstream 185121 368486 ~ 391307 (-) True CI01000034_00368808_00390623
CI01000034_00558341_00561924.mRNA mRNA upstream 374878 558243 ~ 561995 (-) True CI01000034_00558341_00561924
CI01000034_00571856_00577732.mRNA mRNA upstream 388491 571856 ~ 577732 (-) False CI01000034_00571856_00577732
CI01000034_00599073_00603301.mRNA mRNA upstream 415708 599073 ~ 603301 (-) True CI01000034_00599073_00603301
TU194534 other upstream 46039 229404 ~ 267246 (-) True G171229
TU194626 other upstream 393123 577872 ~ 584283 (-) True G171318
TU194720 other upstream 888248 1072584 ~ 1077222 (-) True G171395
TU194733 other upstream 1128164 1318049 ~ 1318254 (-) True G171408
TU195117 other upstream 1680753 1864118 ~ 1866373 (-) True G171755

Expression Profile