RNA id: TU194577


Basic Information

Item Value
RNA id TU194577
length 288
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G171272
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 290578 ~ 335778 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGTATGAGCTGAAGAAAGTGTCTCCAACCATCATAAACATACTCCTTACGGCTCCAGGGGGAAACATGATGCATTAATAGATGGGGGGTGAAAACATTTGGAATTTGAAGATCAAGGTAAATTGTATTTAATTTGTCTTCCGGGAAACATGCAAGTATTTTCTGTTGCTTCCGAAGGGCAGTACTAAATGAAAAAAATTGATATTTAAAACAAATAAGAAAAATTTGTACATCTTCATCCTGTTCAAAAGTTTTCACCCCCCTCATCTATTAATGCATCATGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194463 lncRNA downstream 102699 169652 ~ 187879 (-) True G171177
TU194495 lncRNA downstream 107213 183024 ~ 183365 (-) True G171206
TU194417 lncRNA downstream 246479 43738 ~ 44099 (-) True G171136
TU194412 lncRNA downstream 247330 23190 ~ 43248 (-) True G171131
TU194427 lncRNA downstream 277693 11750 ~ 12885 (-) False G171146
TU194632 lncRNA upstream 11071 346849 ~ 351155 (-) True G171324
TU194657 lncRNA upstream 61936 397714 ~ 399839 (-) True G171339
TU194660 lncRNA upstream 76415 412193 ~ 412427 (-) True G171340
TU194661 lncRNA upstream 76894 412672 ~ 413037 (-) True G171341
TU194617 lncRNA upstream 105509 441287 ~ 442256 (-) True G171309
CI01000034_00101894_00115404.mRNA mRNA downstream 175174 101052 ~ 115404 (-) True CI01000034_00101894_00115404
CI01000034_00097095_00098729.mRNA mRNA downstream 191455 97026 ~ 99123 (-) True CI01000034_00097095_00098729
CI01000034_00071780_00082031.mRNA mRNA downstream 208547 71544 ~ 82031 (-) True CI01000034_00071780_00082031
CI01000034_00051315_00059354.mRNA mRNA downstream 231224 50716 ~ 59354 (-) True CI01000034_00051315_00059354
CI01000034_00361018_00362033.mRNA mRNA upstream 25136 360914 ~ 362033 (-) True CI01000034_00361018_00362033
CI01000034_00368808_00390623.mRNA mRNA upstream 32708 368486 ~ 391307 (-) True CI01000034_00368808_00390623
CI01000034_00558341_00561924.mRNA mRNA upstream 222465 558243 ~ 561995 (-) True CI01000034_00558341_00561924
CI01000034_00571856_00577732.mRNA mRNA upstream 236078 571856 ~ 577732 (-) False CI01000034_00571856_00577732
CI01000034_00599073_00603301.mRNA mRNA upstream 263295 599073 ~ 603301 (-) True CI01000034_00599073_00603301
TU194534 other downstream 23332 229404 ~ 267246 (-) True G171229
TU194626 other upstream 240710 577872 ~ 584283 (-) True G171318
TU194720 other upstream 735835 1072584 ~ 1077222 (-) True G171395
TU194733 other upstream 975751 1318049 ~ 1318254 (-) True G171408
TU195117 other upstream 1528340 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 2106043 2441821 ~ 2446293 (-) False G171835

Expression Profile