RNA id: TU192237


Basic Information

Item Value
RNA id TU192237
length 242
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G169220
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 587903 ~ 588144 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAAGTGTCTGAATAAATGTTCATGTTTAACGGAATAACAGAATTTTTTTTAAAAAAAAGATCAAGAATGAAAATGAAAGGAAAACACCACGTTCAGTACAATAGAAAACAACACATTCATCATCCTGTCATCCTGTTGATTACCACAGATAATAATTTTGTATCTAAATTATGCAGAAAATAGGTAAAGAATGAAAGATGTCTCTTGTAAGTACACATATATTTTTTGTTAGTTGTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192189 lncRNA upstream 28662 557107 ~ 559241 (+) True G169174
TU192188 lncRNA upstream 30944 556728 ~ 556959 (+) True G169173
TU192182 lncRNA upstream 31280 555187 ~ 556623 (+) False G169172
TU192238 lncRNA downstream 1710 589854 ~ 590199 (+) True G169221
TU192206 lncRNA downstream 4858 593002 ~ 593936 (+) True G169189
TU192232 lncRNA downstream 24292 612436 ~ 613239 (+) True G169215
TU192202 lncRNA downstream 26887 647858 ~ 648777 (+) True G169185
TU192198 lncRNA downstream 38406 626550 ~ 630549 (+) True G169181
CI01000034_00545816_00547683.mRNA mRNA upstream 39389 545816 ~ 548514 (+) True CI01000034_00545816_00547683
CI01000034_00520790_00525323.mRNA mRNA upstream 62330 520672 ~ 525573 (+) True CI01000034_00520790_00525323
CI01000034_00486238_00516732.mRNA mRNA upstream 70379 486238 ~ 517524 (+) True CI01000034_00486238_00516732
CI01000034_00455762_00459788.mRNA mRNA upstream 127976 455145 ~ 459927 (+) True CI01000034_00455762_00459788
CI01000034_00422322_00453621.mRNA mRNA upstream 134259 421475 ~ 453644 (+) True CI01000034_00422322_00453621
CI01000034_00615867_00624387.mRNA mRNA downstream 26814 614958 ~ 625318 (+) False CI01000034_00615867_00624387
CI01000034_00637189_00642362.mRNA mRNA downstream 48826 636970 ~ 642439 (+) True CI01000034_00637189_00642362
CI01000034_00643011_00645310.mRNA mRNA downstream 54757 642901 ~ 645310 (+) False CI01000034_00643011_00645310
CI01000034_00661553_00677752.mRNA mRNA downstream 73409 661553 ~ 678477 (+) False CI01000034_00661553_00677752
CI01000034_00683973_00725610.mRNA mRNA downstream 95829 683973 ~ 725905 (+) False CI01000034_00683973_00725610
TU192195 other downstream 54853 645451 ~ 646410 (+) True G169178
TU192338 other downstream 381117 969261 ~ 969921 (+) True G169309
TU192400 other downstream 515396 1103540 ~ 1119019 (+) True G169357
TU192449 other downstream 562153 1150297 ~ 1193560 (+) True G169394
TU192378 other downstream 662075 1250219 ~ 1310878 (+) True G169340

Expression Profile