RNA id: TU192269


Basic Information

Item Value
RNA id TU192269
length 374
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G169250
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 770743 ~ 771116 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTATTTATATTGTGAGTATTAGGCTTATCATTATTGCTGATCACTGTTGTTGTGCTATGATATTGTAATATTTACCATTATATAATCAGAGGAGTATAGAAAAGTTTATGAAAGTGTCACTTCACAATACAACAGCAAAATATATAAGTATAGTATTTTTATGTTACATTAATACCCATTGTGCGCGCTGTATCTTTAATACCGCGTGGTTTATATACATCTTGCCGCTGATTGGGCTGACATTTCTGACACACCCACCAAACAAGAGAAAACGTATCTCAAACCCGTTGCACACCGTTTCCAGGAAACATGTCGTTCAACCCGGAAAACGTAGCAAAACGTTGCGCACCGGTTTGAGCTCGAATGTGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192264 lncRNA upstream 6627 763886 ~ 764116 (+) True G169245
TU192220 lncRNA upstream 36650 733755 ~ 734093 (+) True G169203
TU192222 lncRNA upstream 37295 732615 ~ 733448 (+) True G169205
TU192218 lncRNA upstream 52312 716155 ~ 718431 (+) True CI01000034_00683973_00725610
TU192250 lncRNA upstream 91595 678069 ~ 679148 (+) False CI01000034_00661553_00677752
TU192217 lncRNA downstream 21059 792175 ~ 799794 (+) True G169200
TU192273 lncRNA downstream 33577 804693 ~ 816630 (+) True G169254
TU192227 lncRNA downstream 100886 872002 ~ 872400 (+) True G169210
TU192279 lncRNA downstream 103661 874777 ~ 875411 (+) True G169259
TU192280 lncRNA downstream 105694 876810 ~ 877053 (+) True G169260
CI01000034_00735558_00738466.mRNA mRNA upstream 31268 735487 ~ 739475 (+) True CI01000034_00735558_00738466
CI01000034_00683973_00725610.mRNA mRNA upstream 44838 683973 ~ 725905 (+) False CI01000034_00683973_00725610
CI01000034_00661553_00677752.mRNA mRNA upstream 92266 661553 ~ 678477 (+) False CI01000034_00661553_00677752
CI01000034_00643011_00645310.mRNA mRNA upstream 125433 642901 ~ 645310 (+) False CI01000034_00643011_00645310
CI01000034_00637189_00642362.mRNA mRNA upstream 128304 636970 ~ 642439 (+) True CI01000034_00637189_00642362
CI01000034_00785411_00801907.mRNA mRNA downstream 13429 784545 ~ 802059 (+) False CI01000034_00785411_00801907
CI01000034_00821815_00825192.mRNA mRNA downstream 49479 820595 ~ 825205 (+) True CI01000034_00821815_00825192
CI01000034_00860887_00862727.mRNA mRNA downstream 89771 860887 ~ 862901 (+) True CI01000034_00860887_00862727
CI01000034_00943362_00945523.mRNA mRNA downstream 172246 943362 ~ 945631 (+) True CI01000034_00943362_00945523
CI01000034_00951238_00955839.mRNA mRNA downstream 179351 950467 ~ 956087 (+) True CI01000034_00951238_00955839
TU192195 other upstream 124333 645451 ~ 646410 (+) True G169178
TU192338 other downstream 198145 969261 ~ 969921 (+) True G169309
TU192400 other downstream 332424 1103540 ~ 1119019 (+) True G169357
TU192449 other downstream 379181 1150297 ~ 1193560 (+) True G169394
TU192378 other downstream 479103 1250219 ~ 1310878 (+) True G169340
TU192663 other downstream 955394 1726510 ~ 1726632 (+) True G169586

Expression Profile