RNA id: TU192299


Basic Information

Item Value
RNA id TU192299
length 210
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G169275
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 912001 ~ 912287 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAATGTTCTGTCCTTCCAATGAAAGTGTATTTTCAGCTAGAGAACAAGAACGTTGGTGTTCATTTTCATGTGTTACACAGCACGTTTGACCTTCCGCAAGAACCATTGAGGCTCGTTCTTGTGTGTTACGCAGCACGTTTGAGCTTCCGCAAGAACCACTGAGGTTCACTATCGTGTGTTACGCAGTACGTTTGAGCTTCCGCAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192283 lncRNA upstream 1114 893619 ~ 910887 (+) True G169262
TU192280 lncRNA upstream 34948 876810 ~ 877053 (+) True G169260
TU192279 lncRNA upstream 36590 874777 ~ 875411 (+) True G169259
TU192227 lncRNA upstream 39601 872002 ~ 872400 (+) True G169210
TU192273 lncRNA upstream 95371 804693 ~ 816630 (+) True G169254
TU192337 lncRNA downstream 53566 965853 ~ 966104 (+) True G169308
TU192343 lncRNA downstream 67224 979511 ~ 982209 (+) True G169312
TU192330 lncRNA downstream 80873 993160 ~ 1021824 (+) False G169302
TU192331 lncRNA downstream 80873 993160 ~ 1021824 (+) True G169302
TU192399 lncRNA downstream 141256 1053543 ~ 1119019 (+) False G169357
CI01000034_00860887_00862727.mRNA mRNA upstream 49100 860887 ~ 862901 (+) True CI01000034_00860887_00862727
CI01000034_00821815_00825192.mRNA mRNA upstream 86796 820595 ~ 825205 (+) True CI01000034_00821815_00825192
CI01000034_00785411_00801907.mRNA mRNA upstream 109942 784545 ~ 802059 (+) False CI01000034_00785411_00801907
CI01000034_00735558_00738466.mRNA mRNA upstream 172526 735487 ~ 739475 (+) True CI01000034_00735558_00738466
CI01000034_00683973_00725610.mRNA mRNA upstream 186096 683973 ~ 725905 (+) False CI01000034_00683973_00725610
CI01000034_00943362_00945523.mRNA mRNA downstream 31075 943362 ~ 945631 (+) True CI01000034_00943362_00945523
CI01000034_00951238_00955839.mRNA mRNA downstream 38180 950467 ~ 956087 (+) True CI01000034_00951238_00955839
CI01000034_01124686_01125224.mRNA mRNA downstream 212399 1124686 ~ 1126197 (+) False CI01000034_01124686_01125224
CI01000034_01139725_01146104.mRNA mRNA downstream 227438 1139725 ~ 1146324 (+) True CI01000034_01139725_01146104
CI01000034_01210160_01223724.mRNA mRNA downstream 297873 1210160 ~ 1223869 (+) True CI01000034_01210160_01223724
TU192195 other upstream 265591 645451 ~ 646410 (+) True G169178
TU192338 other downstream 56974 969261 ~ 969921 (+) True G169309
TU192400 other downstream 191253 1103540 ~ 1119019 (+) True G169357
TU192449 other downstream 238010 1150297 ~ 1193560 (+) True G169394
TU192378 other downstream 337932 1250219 ~ 1310878 (+) True G169340
TU192663 other downstream 814223 1726510 ~ 1726632 (+) True G169586

Expression Profile