RNA id: TU194863


Basic Information

Item Value
RNA id TU194863
length 221
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G171530
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 963997 ~ 964217 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAAAGGTGCTATATAAATAAAACTTTATCTACTTAAAAGTTACTCAATTTTAACTATAACTCAATACAACTGTACTATTGTCTACATTAAATTTTTCAACAGTCTGTACTTTATCAGAGTATTCTAACACAAGGACGCCTCTGCCAAAAGAGTGTCTGCGTGTCGTTATGTTTGAATTAGTAAGTTGATAACTGATTCCTTCATTTTATTTTTAAGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194776 lncRNA downstream 220226 743066 ~ 743771 (-) True G171451
TU194703 lncRNA downstream 410318 553304 ~ 553679 (-) True G171382
TU194676 lncRNA downstream 495289 465412 ~ 468708 (-) True G171356
TU194617 lncRNA downstream 521741 441287 ~ 442256 (-) True G171309
TU194661 lncRNA downstream 550960 412672 ~ 413037 (-) True G171341
TU194864 lncRNA upstream 1622 965839 ~ 966103 (-) True G171531
TU194729 lncRNA upstream 114145 1078362 ~ 1080996 (-) True G171404
TU194885 lncRNA upstream 158200 1122417 ~ 1122719 (-) True G171549
TU194730 lncRNA upstream 162268 1126485 ~ 1127643 (-) True G171405
TU194908 lncRNA upstream 233761 1197978 ~ 1198270 (-) True G171572
CI01000034_00956861_00961594.mRNA mRNA downstream 2403 956544 ~ 961594 (-) True CI01000034_00956861_00961594
CI01000034_00934363_00941644.mRNA mRNA downstream 22353 932793 ~ 941644 (-) True CI01000034_00934363_00941644
CI01000034_00881526_00896469.mRNA mRNA downstream 67528 881202 ~ 896469 (-) True CI01000034_00881526_00896469
CI01000034_00728121_00732221.mRNA mRNA downstream 231776 727438 ~ 732221 (-) True CI01000034_00728121_00732221
CI01000034_00648618_00659733.mRNA mRNA downstream 304264 647886 ~ 659733 (-) True CI01000034_00648618_00659733
CI01000034_00976338_00983692.mRNA mRNA upstream 11928 976145 ~ 984275 (-) True CI01000034_00976338_00983692
CI01000034_00984505_00989012.mRNA mRNA upstream 20202 984419 ~ 989885 (-) True CI01000034_00984505_00989012
CI01000034_00994278_01019787.mRNA mRNA upstream 29281 993498 ~ 1019864 (-) True CI01000034_00994278_01019787
CI01000034_01021753_01050726.mRNA mRNA upstream 55905 1020122 ~ 1053355 (-) True CI01000034_01021753_01050726
CI01000034_01062505_01083413.mRNA mRNA upstream 98227 1062444 ~ 1083413 (-) False CI01000034_01062505_01083413
TU194626 other downstream 379714 577872 ~ 584283 (-) True G171318
TU194534 other downstream 696751 229404 ~ 267246 (-) True G171229
TU194720 other upstream 107396 1072584 ~ 1077222 (-) True G171395
TU194733 other upstream 347312 1318049 ~ 1318254 (-) True G171408
TU195117 other upstream 899901 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 1477604 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 1477604 2441821 ~ 2446293 (-) False G171835

Expression Profile