Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU192343 |
| length | 2577 |
| lncRNA type | antisense_over |
| GC content | 0.35 |
| exon number | 2 |
| gene id | G169312 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 979511 ~ 982209 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU192337 | lncRNA | upstream | 13407 | 965853 ~ 966104 (+) | True | G169308 |
| TU192299 | lncRNA | upstream | 67224 | 912001 ~ 912287 (+) | True | G169275 |
| TU192283 | lncRNA | upstream | 68624 | 893619 ~ 910887 (+) | True | G169262 |
| TU192280 | lncRNA | upstream | 102458 | 876810 ~ 877053 (+) | True | G169260 |
| TU192279 | lncRNA | upstream | 104100 | 874777 ~ 875411 (+) | True | G169259 |
| TU192330 | lncRNA | downstream | 10951 | 993160 ~ 1021824 (+) | False | G169302 |
| TU192331 | lncRNA | downstream | 10951 | 993160 ~ 1021824 (+) | True | G169302 |
| TU192399 | lncRNA | downstream | 71334 | 1053543 ~ 1119019 (+) | False | G169357 |
| TU192326 | lncRNA | downstream | 80046 | 1062255 ~ 1062988 (+) | True | G169300 |
| TU192410 | lncRNA | downstream | 89951 | 1072160 ~ 1073203 (+) | True | G169366 |
| CI01000034_00951238_00955839.mRNA | mRNA | upstream | 23424 | 950467 ~ 956087 (+) | True | CI01000034_00951238_00955839 |
| CI01000034_00943362_00945523.mRNA | mRNA | upstream | 33880 | 943362 ~ 945631 (+) | True | CI01000034_00943362_00945523 |
| CI01000034_00860887_00862727.mRNA | mRNA | upstream | 116610 | 860887 ~ 862901 (+) | True | CI01000034_00860887_00862727 |
| CI01000034_00821815_00825192.mRNA | mRNA | upstream | 154306 | 820595 ~ 825205 (+) | True | CI01000034_00821815_00825192 |
| CI01000034_00785411_00801907.mRNA | mRNA | upstream | 177452 | 784545 ~ 802059 (+) | False | CI01000034_00785411_00801907 |
| CI01000034_01124686_01125224.mRNA | mRNA | downstream | 142477 | 1124686 ~ 1126197 (+) | False | CI01000034_01124686_01125224 |
| CI01000034_01139725_01146104.mRNA | mRNA | downstream | 157516 | 1139725 ~ 1146324 (+) | True | CI01000034_01139725_01146104 |
| CI01000034_01210160_01223724.mRNA | mRNA | downstream | 227951 | 1210160 ~ 1223869 (+) | True | CI01000034_01210160_01223724 |
| CI01000034_01305634_01306636.mRNA | mRNA | downstream | 323425 | 1305634 ~ 1306844 (+) | True | CI01000034_01305634_01306636 |
| CI01000034_01383935_01395565.mRNA | mRNA | downstream | 401382 | 1383591 ~ 1396448 (+) | False | CI01000034_01383935_01395565 |
| TU192338 | other | upstream | 9590 | 969261 ~ 969921 (+) | True | G169309 |
| TU192195 | other | upstream | 333101 | 645451 ~ 646410 (+) | True | G169178 |
| TU192400 | other | downstream | 121331 | 1103540 ~ 1119019 (+) | True | G169357 |
| TU192449 | other | downstream | 168088 | 1150297 ~ 1193560 (+) | True | G169394 |
| TU192378 | other | downstream | 268010 | 1250219 ~ 1310878 (+) | True | G169340 |
| TU192663 | other | downstream | 744301 | 1726510 ~ 1726632 (+) | True | G169586 |
| TU192920 | other | downstream | 1335764 | 2317973 ~ 2337690 (+) | True | G169806 |
