RNA id: TU192412



Basic Information


Item Value
RNA id TU192412
length 1064
lncRNA type intronic
GC content 0.40
exon number 2
gene id G169368
representative True

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1074720 ~ 1075808 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CGTCGCTTCATAACATTAAGGTTGAACCACTGTAGTCACGTTGACTATTTTAACGATGTCTTTACTACTTTTCTGGACCTTGAAAGTGGTAATTACGTTGCTTTCTCTTGGTGAACAGAAACCTCTCAAATTTCATCAAAAATATCTTAATTTGTGTTCCGATGATGAACGAAGGTCTTACTGGTGTGGAGCAATTGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACCAAACCTTTAAATGAATGTGCAGCATTTTGTAGAAATAAGACTTTTTTTTAATACAAATGTTTTCTTTTGTATTACTGTTATCATAATTTGTGCATGCAACAAAGAAGATGTGCATTTTGTGGATCAGGTGACACGTGTGCATTCATTGACGTCTTTTCTCAGTCAATTTCATTTGATTCATTTGGATTTTGAGACTTTCTTTTCACAGTTTTCAAGCATTTCACAACCCACACACAACAACCAATGAGTGAGCCTGGTGCTAATTATTAAAGTGTGCACAACTACCCATCTATTTGACAAATTCACAAATGTGTGTTACTACATTCAAACTAACACTTTAAAACTCGTGTGTGCAAAATCGATAGCCTTAAATAGGGCACTATTTGAGGAGACAGCCATTTGTAGTGGTGTCCGAAACCATAGTTGACGTTACCAAGTGCACTCGTTCAATCCCATTTAATGCACAGCAAAAACGAGTGTACAACCGATGTACATTCAATGGCTAGAGAATACCCACAATGCAATATGAGGCCGGGTTCACACCGCACGCGTCAGCAGAGCGTAAGCAGCGCGTATTTTTTTCGGCGCCCATGTTAACAGATGAGAGCATTCACACCGCACGCAGAGGCTGCGCGGCAGCGCGTTGCAGGAGCAGAGCAGAAGCAGCAGTGCCGCGATCGTTTCGGCGCTGGGTCTATTTTTGCTGCGCTGCTAACGCTCAATTAAAGTGAAAGTACACCTTTGATGGACAAAATAAATATGACTTCACACAAAAAGTGCTCAAAATGCACAGAATAAGCATATCTAGTGTGTTTTAACAAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU192410 lncRNA upstream 1517 1072160 ~ 1073203 (+) True G169366
TU192326 lncRNA upstream 11732 1062255 ~ 1062988 (+) True G169300
TU192330 lncRNA upstream 52896 993160 ~ 1021824 (+) False G169302
TU192331 lncRNA upstream 52896 993160 ~ 1021824 (+) True G169302
TU192343 lncRNA upstream 92511 979511 ~ 982209 (+) True G169312
TU192409 lncRNA downstream 2527 1078335 ~ 1080864 (+) True G169365
TU192389 lncRNA downstream 6895 1082703 ~ 1083262 (+) True G169351
TU192390 lncRNA downstream 11611 1087419 ~ 1090273 (+) True G169352
TU192430 lncRNA downstream 49457 1125265 ~ 1125475 (+) True CI01000034_01124686_01125224
TU192445 lncRNA downstream 50648 1126456 ~ 1127644 (+) False G169392
CI01000034_00951238_00955839.mRNA mRNA upstream 118633 950467 ~ 956087 (+) True CI01000034_00951238_00955839
CI01000034_00943362_00945523.mRNA mRNA upstream 129089 943362 ~ 945631 (+) True CI01000034_00943362_00945523
CI01000034_00860887_00862727.mRNA mRNA upstream 211819 860887 ~ 862901 (+) True CI01000034_00860887_00862727
CI01000034_00821815_00825192.mRNA mRNA upstream 249515 820595 ~ 825205 (+) True CI01000034_00821815_00825192
CI01000034_00785411_00801907.mRNA mRNA upstream 272661 784545 ~ 802059 (+) False CI01000034_00785411_00801907
CI01000034_01124686_01125224.mRNA mRNA downstream 48878 1124686 ~ 1126197 (+) False CI01000034_01124686_01125224
CI01000034_01139725_01146104.mRNA mRNA downstream 63917 1139725 ~ 1146324 (+) True CI01000034_01139725_01146104
CI01000034_01210160_01223724.mRNA mRNA downstream 134352 1210160 ~ 1223869 (+) True CI01000034_01210160_01223724
CI01000034_01305634_01306636.mRNA mRNA downstream 229826 1305634 ~ 1306844 (+) True CI01000034_01305634_01306636
CI01000034_01383935_01395565.mRNA mRNA downstream 307783 1383591 ~ 1396448 (+) False CI01000034_01383935_01395565
TU192338 other upstream 104799 969261 ~ 969921 (+) True G169309
TU192195 other upstream 428310 645451 ~ 646410 (+) True G169178
TU192400 other downstream 27732 1103540 ~ 1119019 (+) True G169357
TU192449 other downstream 74489 1150297 ~ 1193560 (+) True G169394
TU192378 other downstream 174411 1250219 ~ 1310878 (+) True G169340
TU192663 other downstream 650702 1726510 ~ 1726632 (+) True G169586
TU192920 other downstream 1242165 2317973 ~ 2337690 (+) True G169806

Expression Profile