RNA id: TU192523


Basic Information

Item Value
RNA id TU192523
length 248
lncRNA type intronic
GC content 0.35
exon number 1
gene id G169458
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1356993 ~ 1357240 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTTTTGGTCCACCAAAAATATTCTCGTCGCTTTCTAATATTAATATTGAACTACTGTACCCACATGAACTGATTTAAATATGTTTTTAGTACATTAATGGATCTTGAGAGAGGAAATGTCATTGCTGGCTATGCAGGCCTCACTGAGCCATCGGATTTCAACAAAAATATCTTAATTTGTGTTCCGAAGATTAACGAAGGTCTTACGGGTGTGGAACGACATGAGTAATAAATGACATTATTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192521 lncRNA upstream 3547 1353158 ~ 1353446 (+) True G169456
TU192498 lncRNA upstream 54926 1294169 ~ 1302067 (+) False G169435
TU192496 lncRNA upstream 60989 1295591 ~ 1296004 (+) False G169434
TU192497 lncRNA upstream 60989 1295700 ~ 1296004 (+) True G169434
TU192499 lncRNA upstream 62369 1294169 ~ 1294624 (+) True G169435
TU192525 lncRNA downstream 7965 1365205 ~ 1365584 (+) True G169460
TU192526 lncRNA downstream 11896 1369136 ~ 1369364 (+) True G169461
TU192529 lncRNA downstream 26681 1383921 ~ 1384150 (+) True CI01000034_01383935_01395565
TU192383 lncRNA downstream 47573 1404813 ~ 1410866 (+) True G169345
TU192633 lncRNA downstream 234283 1591523 ~ 1591760 (+) True G169561
CI01000034_01305634_01306636.mRNA mRNA upstream 50149 1305634 ~ 1306844 (+) True CI01000034_01305634_01306636
CI01000034_01210160_01223724.mRNA mRNA upstream 133124 1210160 ~ 1223869 (+) True CI01000034_01210160_01223724
CI01000034_01139725_01146104.mRNA mRNA upstream 210669 1139725 ~ 1146324 (+) True CI01000034_01139725_01146104
CI01000034_01124686_01125224.mRNA mRNA upstream 230796 1124686 ~ 1126197 (+) False CI01000034_01124686_01125224
CI01000034_00951238_00955839.mRNA mRNA upstream 400906 950467 ~ 956087 (+) True CI01000034_00951238_00955839
CI01000034_01383935_01395565.mRNA mRNA downstream 26351 1383591 ~ 1396448 (+) False CI01000034_01383935_01395565
CI01000034_01632580_01633233.mRNA mRNA downstream 274762 1632002 ~ 1633525 (+) True CI01000034_01632580_01633233
CI01000034_01637348_01637904.mRNA mRNA downstream 279371 1636611 ~ 1638009 (+) True CI01000034_01637348_01637904
CI01000034_01657515_01658817.mRNA mRNA downstream 299970 1657210 ~ 1659106 (+) True CI01000034_01657515_01658817
CI01000034_01729413_01730790.mRNA mRNA downstream 372173 1729413 ~ 1731179 (+) False CI01000034_01729413_01730790
TU192378 other upstream 46115 1250219 ~ 1310878 (+) True G169340
TU192449 other upstream 163433 1150297 ~ 1193560 (+) True G169394
TU192400 other upstream 237974 1103540 ~ 1119019 (+) True G169357
TU192338 other upstream 387072 969261 ~ 969921 (+) True G169309
TU192195 other upstream 710583 645451 ~ 646410 (+) True G169178
TU192663 other downstream 369270 1726510 ~ 1726632 (+) True G169586
TU192920 other downstream 960733 2317973 ~ 2337690 (+) True G169806
TU193348 other downstream 2076896 3434136 ~ 3451849 (+) True G170172
TU193699 other downstream 2767860 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193723 other downstream 2837398 4194638 ~ 4194993 (+) True G170522

Expression Profile