RNA id: TU195117



Basic Information


Item Value
RNA id TU195117
length 1335
RNA type TUCP
GC content 0.41
exon number 3
gene id G171755
representative True

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1864118 ~ 1866373 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTCATTATGCGCGGTTTCGTTTCTGTGAAGTGTGAACCCACGGGCTGGGATAACCTGGTGATAACAATCACAATACAGCTCTGACTAAGCCTAAAACCATGTTTTATCAGTGTTCCATTCATTATGAAATATTTATTCATTCATTCCACTTTTTTAGAGAACTCACACACAATCAACAAAAATGCAGCATTTACAGTTTTGATATTTTACGGCAGCTCTTAATGTGTTAGGATAAGCTTTGATGGTGAACACTGAAGTGTTACATTCAGCACCATGATCATGAGTGTGTGGTTGGGAGAGCTTGTTTCTCAGACATTACAGAGCAAAACACATTTTCTCATGGACACCAAGCAGGGGCTTTTAGGGAGATCCAAAAAAAAAAAAAAAAATCACCCTTCAATCTGCTTAAGAAGATCCAAAGTGCAATCTATGTGAGTATGAGAGATGAGACCACAAGGGTAGATTTTGCTTCAGCGCACAGGACGGTATGAACGAAGTTGCTTCCTTGTGACGGTTTCATTTGCGACATGTCCGATGAGGCGTCCGTTTCTTGGTTACCTCTGCTCGGCATCGACTACGCTCATCCAACCATGGTTGGGAAGAGGTCTTCCAAAAGCCACCACTGGCAAAAAGGGTGTCACCATAATAGACTCCACTGAGGAAATACACAGAAATGAGAACATTAAAAGAACGGACCAAATACTTTCAATGCACATGGGGGAAAAATCCATCTGCTGACATACCATCTTCAGGGTCTGGATAGAAGGAGAGCAGCTCTGGTTCGCTTTCCTGAATGACCTTCCTCCTGTTCATCCTCTGCTGCAGGCGCTGAAACATTCTCTGCTCCCGAATACGTTGGATATCCCACCTGAAAAAGAGAAATGAGATTAAAGGATAAATAGATTCACAATGCTCTCATCTACTCGACGCTATACAGAAAAACAAAAAACAAGCATCACCTCTTCCTCCTCTTCTCATCCAGTTCAAGCTTTGAATGTCTCTTCAGAAAGACGTTATCATCCAGACACTGCACAAAAGAAAGTATTTAGATGGATTACTAGGGCTGAACGATTAATCAAAATAACACTGAAATCACAATATGGCTTAGTGCTCTTATCAGTTTGCAAAGGCTGCACTGTAATGAAATACATATGTGAGCTAGCAGTTCATGATATGGTGTTTTCAGAATCTCACAGCGGATCGGTTCGCAGTAAATGCAGCCCCACAAATTCCATTTTCATCTGCTCTGAGTTTGGGTTGCTTATAACGTGCATTTGGGAACAATTCCACACACCATCTTTTCAAACTTGTAATGAGTAGTGCTTATAAACCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU195121 lncRNA downstream 3027 1860582 ~ 1861091 (-) True G171759
TU195151 lncRNA downstream 8667 1854033 ~ 1855451 (-) True G171785
TU195113 lncRNA downstream 33491 1827596 ~ 1830627 (-) True G171751
TU195093 lncRNA downstream 83062 1780846 ~ 1781056 (-) True G171731
TU195086 lncRNA downstream 96040 1764501 ~ 1768078 (-) True G171724
TU195105 lncRNA upstream 83769 1950142 ~ 1952366 (-) True G171743
TU195110 lncRNA upstream 86085 1952458 ~ 1952778 (-) True G171748
TU195107 lncRNA upstream 86537 1952910 ~ 1953364 (-) True G171745
TU195182 lncRNA upstream 93081 1959454 ~ 1961649 (-) True G171815
TU195247 lncRNA upstream 208323 2074696 ~ 2074906 (-) True G171860
CI01000034_01842093_01847705.mRNA mRNA downstream 16413 1840937 ~ 1847705 (-) True CI01000034_01842093_01847705
CI01000034_01785791_01788743.mRNA mRNA downstream 74303 1785235 ~ 1789815 (-) True CI01000034_01785791_01788743
CI01000034_01718736_01720031.mRNA mRNA downstream 143872 1718606 ~ 1720246 (-) True CI01000034_01718736_01720031
CI01000034_01703545_01705527.mRNA mRNA downstream 158075 1702892 ~ 1706043 (-) True CI01000034_01703545_01705527
CI01000034_01694301_01697568.mRNA mRNA downstream 165691 1694041 ~ 1698427 (-) True CI01000034_01694301_01697568
CI01000034_01957876_01995623.mRNA mRNA upstream 91503 1957876 ~ 1995816 (-) True CI01000034_01957876_01995623
CI01000034_02010544_02026521.mRNA mRNA upstream 143769 2010142 ~ 2026725 (-) True CI01000034_02010544_02026521
CI01000034_02092229_02092596.mRNA mRNA upstream 225586 2091959 ~ 2092642 (-) True CI01000034_02092229_02092596
CI01000034_02098976_02103261.mRNA mRNA upstream 231230 2097603 ~ 2103261 (-) True CI01000034_02098976_02103261
CI01000034_02110958_02136112.mRNA mRNA upstream 244573 2110946 ~ 2136112 (-) True CI01000034_02110958_02136112
TU194733 other downstream 545864 1318049 ~ 1318254 (-) True G171408
TU194720 other downstream 786896 1072584 ~ 1077222 (-) True G171395
TU194626 other downstream 1279835 577872 ~ 584283 (-) True G171318
TU194534 other downstream 1596872 229404 ~ 267246 (-) True G171229
TU195220 other upstream 575448 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 575448 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 575546 2441919 ~ 2446293 (-) True G171835
TU195214 other upstream 643440 2509813 ~ 2510031 (-) True G171834
TU195212 other upstream 643780 2510153 ~ 2511521 (-) True CI01000034_02510595_02511512

Expression Profile