RNA id: TU195107


Basic Information

Item Value
RNA id TU195107
length 455
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G171745
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1952910 ~ 1953364 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNNNNTAATGACTTTATTCAACAAATTCGTCTGTCCCCTGACATACTGCTACGCTATTTTCATTGCAGAGCTTCAGTGTTTATGTCTGAACGGGGGCTCAGTATTGGCCTGTAGTACCTTGTGTACCTATGTGTGGATAAGATACCCTCGGATTTCATCAAAAATATCTTAATTTGTGTTCCAAAGACAAACGAAGGTCTTGTGGGTTTGGGGACGACAGAATTTCATTTTTGGGTGAGCTAACCCTTTTAAGAAGATGTCAAGCGTCTCGAGACCCTGCGTTCTTTTCTTTATTGGGCTGCGTCCGAAAGGTTGTCTCGCTGCCCTATCAGGCATTGACTTTGCGGGCAGCGTTTGCACATGAAGGTACCTCACAATATATACTGCCCGGCCAAAAAAAAAGTCGCTGTTTGGATTTTAATAGGCAAATACTTAAGAGTCTATGGATGGATCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195110 lncRNA downstream 132 1952458 ~ 1952778 (-) True G171748
TU195105 lncRNA downstream 544 1950142 ~ 1952366 (-) True G171743
TU195121 lncRNA downstream 91819 1860582 ~ 1861091 (-) True G171759
TU195151 lncRNA downstream 97459 1854033 ~ 1855451 (-) True G171785
TU195113 lncRNA downstream 122283 1827596 ~ 1830627 (-) True G171751
TU195182 lncRNA upstream 6090 1959454 ~ 1961649 (-) True G171815
TU195247 lncRNA upstream 121332 2074696 ~ 2074906 (-) True G171860
TU195256 lncRNA upstream 142486 2095850 ~ 2096308 (-) True G171867
TU195235 lncRNA upstream 209903 2163267 ~ 2165434 (-) True G171849
TU195227 lncRNA upstream 449729 2403093 ~ 2428544 (-) True G171841
CI01000034_01842093_01847705.mRNA mRNA downstream 105205 1840937 ~ 1847705 (-) True CI01000034_01842093_01847705
CI01000034_01785791_01788743.mRNA mRNA downstream 163095 1785235 ~ 1789815 (-) True CI01000034_01785791_01788743
CI01000034_01718736_01720031.mRNA mRNA downstream 232664 1718606 ~ 1720246 (-) True CI01000034_01718736_01720031
CI01000034_01703545_01705527.mRNA mRNA downstream 246867 1702892 ~ 1706043 (-) True CI01000034_01703545_01705527
CI01000034_01694301_01697568.mRNA mRNA downstream 254483 1694041 ~ 1698427 (-) True CI01000034_01694301_01697568
CI01000034_01957876_01995623.mRNA mRNA upstream 4512 1957876 ~ 1995816 (-) True CI01000034_01957876_01995623
CI01000034_02010544_02026521.mRNA mRNA upstream 56778 2010142 ~ 2026725 (-) True CI01000034_02010544_02026521
CI01000034_02092229_02092596.mRNA mRNA upstream 138595 2091959 ~ 2092642 (-) True CI01000034_02092229_02092596
CI01000034_02098976_02103261.mRNA mRNA upstream 144239 2097603 ~ 2103261 (-) True CI01000034_02098976_02103261
CI01000034_02110958_02136112.mRNA mRNA upstream 157582 2110946 ~ 2136112 (-) True CI01000034_02110958_02136112
TU195117 other downstream 86537 1864118 ~ 1866373 (-) True G171755
TU194733 other downstream 634656 1318049 ~ 1318254 (-) True G171408
TU194720 other downstream 875688 1072584 ~ 1077222 (-) True G171395
TU194626 other downstream 1368627 577872 ~ 584283 (-) True G171318
TU194534 other downstream 1685664 229404 ~ 267246 (-) True G171229
TU195220 other upstream 488457 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 488457 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 488555 2441919 ~ 2446293 (-) True G171835
TU195214 other upstream 556449 2509813 ~ 2510031 (-) True G171834
TU195212 other upstream 556789 2510153 ~ 2511521 (-) True CI01000034_02510595_02511512

Expression Profile