RNA id: TU195279


Basic Information

Item Value
RNA id TU195279
length 607
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G171890
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2543163 ~ 2543769 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGGGGTTAGTCGCATTTAATTATGCATAATTTATAGTTGTTACTACAGTAACTACATGTAATATGCTTAACAAGGTATACTGTAAAATAAAGTGTTACCAAAAATAATAATTAAATCATACTCAAAATGTGCAAAAATAATTTTTAAAACAAGAGCAATTGTATCCGTTCTTGTTTAGGGTGACATCATCAAGCCGTTTGTGTGAAGTGATGACACAGTTCGAGCTAGTGGTAATCCCTCACTGTTACAGAGCATTTCACTTTCACTTTCCAATGTGACGAGGTAGCCTACTTTAGCAAATCCCTAGCCCCGCTTGCATTATGACGCAATTTTAAAATGGCGCGTATAGCTACTTTGTTAAAAACAATCGTCGATTGCAATAGTCTGCAAAATTCCCCTTTTTTTATTTTATTTCATATATCTTTCAAAGAATCATCAAAGGATGTTAATCCAGGACCATATGTTATGCAAAACAGGTAATGGACGACAAAGTCTTGTAAAAAGAAACATAACTGTTTTACACCAAAGCGTAAATACTGGCCACATAAAAAAATAAATAAATAAAAAAGGAAAATATAGGGCTAAGTGTCTCTGTCAGTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195227 lncRNA downstream 114619 2403093 ~ 2428544 (-) True G171841
TU195235 lncRNA downstream 377729 2163267 ~ 2165434 (-) True G171849
TU195256 lncRNA downstream 446855 2095850 ~ 2096308 (-) True G171867
TU195247 lncRNA downstream 468257 2074696 ~ 2074906 (-) True G171860
TU195182 lncRNA downstream 581514 1959454 ~ 1961649 (-) True G171815
TU195304 lncRNA upstream 45775 2589544 ~ 2589761 (-) True G171907
TU195349 lncRNA upstream 126387 2670156 ~ 2670385 (-) True G171937
TU195351 lncRNA upstream 127086 2670855 ~ 2671069 (-) True G171939
TU195338 lncRNA upstream 135909 2679678 ~ 2735927 (-) True G171926
TU195324 lncRNA upstream 222321 2766090 ~ 2774240 (-) True G171920
CI01000034_02513892_02532734.mRNA mRNA downstream 10429 2513878 ~ 2532734 (-) True CI01000034_02513892_02532734
CI01000034_02510595_02511512.mRNA mRNA downstream 31651 2510334 ~ 2511512 (-) False CI01000034_02510595_02511512
CI01000034_02459679_02504620.mRNA mRNA downstream 38141 2459679 ~ 2505022 (-) True CI01000034_02459679_02504620
CI01000034_02295276_02337198.mRNA mRNA downstream 205965 2295276 ~ 2337198 (-) True CI01000034_02295276_02337198
CI01000034_02182977_02213069.mRNA mRNA downstream 330094 2182964 ~ 2213069 (-) True CI01000034_02182977_02213069
CI01000034_02575638_02577407.mRNA mRNA upstream 31575 2575344 ~ 2577572 (-) True CI01000034_02575638_02577407
CI01000034_02581924_02584745.mRNA mRNA upstream 37810 2581579 ~ 2584745 (-) True CI01000034_02581924_02584745
CI01000034_02585852_02587541.mRNA mRNA upstream 41863 2585632 ~ 2587541 (-) True CI01000034_02585852_02587541
CI01000034_02596578_02625089.mRNA mRNA upstream 52400 2596169 ~ 2625407 (-) True CI01000034_02596578_02625089
CI01000034_02673701_02680445.mRNA mRNA upstream 129752 2673521 ~ 2680753 (-) True CI01000034_02673701_02680445
TU195214 other downstream 31642 2509813 ~ 2510031 (-) True G171834
TU195212 other downstream 31642 2510153 ~ 2511521 (-) True CI01000034_02510595_02511512
TU195220 other downstream 96870 2441821 ~ 2446293 (-) False G171835
TU195221 other downstream 96870 2441821 ~ 2446293 (-) False G171835
TU195219 other downstream 96870 2441919 ~ 2446293 (-) True G171835
TU195428 other upstream 691194 3234963 ~ 3236615 (-) False G172016
TU195584 other upstream 847744 3391513 ~ 3397813 (-) False G172151
TU195571 other upstream 847920 3391689 ~ 3397648 (-) False G172151
TU195573 other upstream 847993 3391762 ~ 3397648 (-) False G172151
TU195577 other upstream 847993 3391762 ~ 3397648 (-) False G172151

Expression Profile