RNA id: TU195338



Basic Information


Item Value
RNA id TU195338
length 1383
lncRNA type read_through
GC content 0.37
exon number 3
gene id G171926
representative True

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2679678 ~ 2735927 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATTTCATCCTTTTTATGCGTCACTAATGAGTATCGTTTTTGATAATTGGTGCAGACATGCTTTTAAGCAAACTTCATAGATAATCAGCTGCTCATGTTTTGGCTCAAATGCACAAACATCAAACTACAGGATGTGTCCTGTAATACTGAGAAATAGTTTAATTAATGTTTGATGTCAGAATGACAGTAATGAAGAATGTGCATTGACACAACAACTTGGTTGCTTCTCTTTCATGTTTTTTCTGTCATATGCTCCAAGATTCAAGGTGAAGTGTTTCAAAGTATGTCAAGTATGTATGAGATTTACAGGAAAAACATTTTCTCAATTTCATCATAAGAGCTGTGAACAGATGTGTGCAGTATGCGCTCTGCATGTATCTTGTAATACATAGAATCTGTCAGTTCATCTACCTAGTGGTCTTCTCTTTAGAAACCCATCACAGATCTCTTATTCTGGTGTGACCAAAGTAACGCTTCAAATTACTAATGGTTCAGTTTTAATCACGGTTTTAGGGTTTAGGTACGGTTTGGTATGTGCTATGTTCAGGGGAAAACAACAAATAATTAAACTACAAGCAACAGCACAAATAAATACAGCAGAGCAAAGATACAAATAAAATAAACAGTGCTTTGCAGGTTTTTCAGGTACAAATGAAAAAAATGACAGTCTTCACTGTAAATAAAGAATAATCATTATTGAAGCTACAAAAGCTATTCAGTCAAGAGCAGTGAGTGATTTCCTTGCTTTTTGTTGTTTGCTGCTGTCTGTTTTTAATGTTAATCAGTGTCACTTATGTTCACTTAAGACATAACCTACTGTGTTTGCTAGGATACTCGCCAAGACGGGCATGTTGACAATTTTTGTGTGAATTTGTCAGTTCAAGCGCAAGACTTGAAAGAGAACTCAATATTTGCGCGCTGTCTGAGATGAGGCTTTCCGTGTGCGCGCTTCAGGTGAGTGCACACACAAATCTTCTCTCAGTGCACGCGAGTTCTCATTCGTGTCGTCTTGCGCTTGAAAGTTAAAATTGGCAAGGCTTAAATGAGTTTAGTTTAAACACAGAATGCAACGTGTGCTGTTCATGTCTCACCAGTGATCGAGCGCTATCAACACCTGGGTGATGGTGGCGTAAATGACTGGTTCACATTGAACAAAGTTTAAGGGAAGCCAGGATGTGCATTTATTGACAGAAACATACATTAGTCTAACTCTATTTACGCGTTATTTTACACAAACCGTATTATAGATGCGTCGTCAGATTTGAGATAAACCGCGGTGCAAGTGCTTGCCGAACCGTGGGTAGAGAACGGTACGGTACAGTTCGGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGGGATGCACAATATATGTAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU195351 lncRNA downstream 8609 2670855 ~ 2671069 (-) True G171939
TU195349 lncRNA downstream 9293 2670156 ~ 2670385 (-) True G171937
TU195304 lncRNA downstream 89917 2589544 ~ 2589761 (-) True G171907
TU195279 lncRNA downstream 135909 2543163 ~ 2543769 (-) True G171890
TU195227 lncRNA downstream 251134 2403093 ~ 2428544 (-) True G171841
TU195324 lncRNA upstream 30163 2766090 ~ 2774240 (-) True G171920
TU195339 lncRNA upstream 40013 2775940 ~ 2776384 (-) True G171927
TU195358 lncRNA upstream 59231 2795158 ~ 2795444 (-) True G171946
TU195359 lncRNA upstream 62984 2798911 ~ 2799189 (-) True G171947
TU195372 lncRNA upstream 109302 2845229 ~ 2845621 (-) True G171960
CI01000034_02596578_02625089.mRNA mRNA downstream 54271 2596169 ~ 2625407 (-) True CI01000034_02596578_02625089
CI01000034_02585852_02587541.mRNA mRNA downstream 92137 2585632 ~ 2587541 (-) True CI01000034_02585852_02587541
CI01000034_02581924_02584745.mRNA mRNA downstream 94933 2581579 ~ 2584745 (-) True CI01000034_02581924_02584745
CI01000034_02575638_02577407.mRNA mRNA downstream 102106 2575344 ~ 2577572 (-) True CI01000034_02575638_02577407
CI01000034_02513892_02532734.mRNA mRNA downstream 146944 2513878 ~ 2532734 (-) True CI01000034_02513892_02532734
CI01000034_02778206_02786310.mRNA mRNA upstream 41773 2777700 ~ 2786310 (-) True CI01000034_02778206_02786310
CI01000034_02875948_02953386.mRNA mRNA upstream 139731 2875658 ~ 2954520 (-) True CI01000034_02875948_02953386
CI01000034_03247806_03248810.mRNA mRNA upstream 511867 3247794 ~ 3248947 (-) True CI01000034_03247806_03248810
CI01000034_03250695_03253982.mRNA mRNA upstream 514475 3250402 ~ 3254202 (-) True CI01000034_03250695_03253982
CI01000034_03255619_03266388.mRNA mRNA upstream 519341 3255268 ~ 3267690 (-) True CI01000034_03255619_03266388
TU195214 other downstream 168157 2509813 ~ 2510031 (-) True G171834
TU195212 other downstream 168157 2510153 ~ 2511521 (-) True CI01000034_02510595_02511512
TU195220 other downstream 233385 2441821 ~ 2446293 (-) False G171835
TU195428 other upstream 499036 3234963 ~ 3236615 (-) False G172016
TU195584 other upstream 655586 3391513 ~ 3397813 (-) False G172151
TU195571 other upstream 655762 3391689 ~ 3397648 (-) False G172151
TU195573 other upstream 655835 3391762 ~ 3397648 (-) False G172151
TU195577 other upstream 655835 3391762 ~ 3397648 (-) False G172151

Expression Profile