Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU195438 |
| length | 1105 |
| lncRNA type | antisense_over |
| GC content | 0.36 |
| exon number | 2 |
| gene id | G172022 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 3151881 ~ 3171535 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU195465 | lncRNA | downstream | 25486 | 3144604 ~ 3144832 (-) | True | G172048 |
| TU195372 | lncRNA | downstream | 324697 | 2845229 ~ 2845621 (-) | True | G171960 |
| TU195359 | lncRNA | downstream | 371129 | 2798911 ~ 2799189 (-) | True | G171947 |
| TU195358 | lncRNA | downstream | 374874 | 2795158 ~ 2795444 (-) | True | G171946 |
| TU195339 | lncRNA | downstream | 393934 | 2775940 ~ 2776384 (-) | True | G171927 |
| TU195448 | lncRNA | upstream | 18377 | 3189912 ~ 3190509 (-) | True | G172031 |
| TU195433 | lncRNA | upstream | 39171 | 3210706 ~ 3214094 (-) | True | G172020 |
| TU195441 | lncRNA | upstream | 55824 | 3227359 ~ 3231997 (-) | True | G172025 |
| TU195432 | lncRNA | upstream | 61984 | 3233519 ~ 3233712 (-) | True | G172019 |
| TU195429 | lncRNA | upstream | 63428 | 3234963 ~ 3235347 (-) | True | G172016 |
| CI01000034_02875948_02953386.mRNA | mRNA | downstream | 215798 | 2875658 ~ 2954520 (-) | True | CI01000034_02875948_02953386 |
| CI01000034_02778206_02786310.mRNA | mRNA | downstream | 384008 | 2777700 ~ 2786310 (-) | True | CI01000034_02778206_02786310 |
| CI01000034_02712912_02755978.mRNA | mRNA | downstream | 414340 | 2712687 ~ 2755978 (-) | True | CI01000034_02712912_02755978 |
| CI01000034_02673701_02680445.mRNA | mRNA | downstream | 489565 | 2673521 ~ 2680753 (-) | True | CI01000034_02673701_02680445 |
| CI01000034_02596578_02625089.mRNA | mRNA | downstream | 544911 | 2596169 ~ 2625407 (-) | True | CI01000034_02596578_02625089 |
| CI01000034_03247806_03248810.mRNA | mRNA | upstream | 76259 | 3247794 ~ 3248947 (-) | True | CI01000034_03247806_03248810 |
| CI01000034_03250695_03253982.mRNA | mRNA | upstream | 78867 | 3250402 ~ 3254202 (-) | True | CI01000034_03250695_03253982 |
| CI01000034_03255619_03266388.mRNA | mRNA | upstream | 83733 | 3255268 ~ 3267690 (-) | True | CI01000034_03255619_03266388 |
| CI01000034_03285980_03289258.mRNA | mRNA | upstream | 114255 | 3285790 ~ 3289258 (-) | True | CI01000034_03285980_03289258 |
| CI01000034_03577874_03611044.mRNA | mRNA | upstream | 405919 | 3577454 ~ 3611099 (-) | True | CI01000034_03577874_03611044 |
| TU195214 | other | downstream | 658797 | 2509813 ~ 2510031 (-) | True | G171834 |
| TU195212 | other | downstream | 658797 | 2510153 ~ 2511521 (-) | True | CI01000034_02510595_02511512 |
| TU195220 | other | downstream | 724025 | 2441821 ~ 2446293 (-) | False | G171835 |
| TU195428 | other | upstream | 63428 | 3234963 ~ 3236615 (-) | False | G172016 |
| TU195584 | other | upstream | 219978 | 3391513 ~ 3397813 (-) | False | G172151 |
| TU195571 | other | upstream | 220154 | 3391689 ~ 3397648 (-) | False | G172151 |
| TU195573 | other | upstream | 220227 | 3391762 ~ 3397648 (-) | False | G172151 |
| TU195577 | other | upstream | 220227 | 3391762 ~ 3397648 (-) | False | G172151 |
