RNA id: TU195569


Basic Information

Item Value
RNA id TU195569
length 288
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G172149
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3388487 ~ 3388774 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGTCATCGTTTTCACAGATTCGCGTTTTGTTGTTTACTCTGAGGCCGTTTTCAAAAACTTGCACTTTGAAACCCGTTTTCAAAAGTTTGGATTTTCAGGCACCCAAAATGCTGTTGACGTTTAAATGAACGGCCAAACCGCGTAAAAAGTTTTCTGTTTTTAGTTGAAACGGGTGTCATGTAGGGCTGCACGATTTATCGCGATTAAACCGCACGCGATTTGGCAAAGGCTGCGATTATTTTATGCGCAGCTTGTCGGGGCTGCGTCCCACTCCAGTTTTAGACACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195568 lncRNA downstream 249 3388002 ~ 3388238 (-) True G172148
TU195567 lncRNA downstream 618 3387632 ~ 3387869 (-) True G172147
TU195434 lncRNA downstream 57993 3328810 ~ 3330494 (-) True G172021
TU195447 lncRNA downstream 63276 3324484 ~ 3325211 (-) True G172030
TU195539 lncRNA downstream 84224 3304027 ~ 3304263 (-) True G172122
TU195590 lncRNA upstream 2370 3391144 ~ 3397813 (-) False G172151
TU195593 lncRNA upstream 2613 3391387 ~ 3397813 (-) False G172151
TU195575 lncRNA upstream 2915 3391689 ~ 3397648 (-) False G172151
TU195583 lncRNA upstream 2915 3391689 ~ 3397813 (-) False G172151
TU195589 lncRNA upstream 2915 3391689 ~ 3451802 (-) False G172151
CI01000034_03285980_03289258.mRNA mRNA downstream 99229 3285790 ~ 3289258 (-) True CI01000034_03285980_03289258
CI01000034_03255619_03266388.mRNA mRNA downstream 120797 3255268 ~ 3267690 (-) True CI01000034_03255619_03266388
CI01000034_03250695_03253982.mRNA mRNA downstream 134285 3250402 ~ 3254202 (-) True CI01000034_03250695_03253982
CI01000034_03247806_03248810.mRNA mRNA downstream 139540 3247794 ~ 3248947 (-) True CI01000034_03247806_03248810
CI01000034_02875948_02953386.mRNA mRNA downstream 433967 2875658 ~ 2954520 (-) True CI01000034_02875948_02953386
CI01000034_03577874_03611044.mRNA mRNA upstream 188680 3577454 ~ 3611099 (-) True CI01000034_03577874_03611044
CI01000034_03659420_03661699.mRNA mRNA upstream 270516 3659290 ~ 3661699 (-) True CI01000034_03659420_03661699
CI01000034_03803160_03827982.mRNA mRNA upstream 414058 3802832 ~ 3827982 (-) True CI01000034_03803160_03827982
CI01000034_03911480_03913846.mRNA mRNA upstream 522301 3911075 ~ 3913846 (-) True CI01000034_03911480_03913846
CI01000034_03915853_03921269.mRNA mRNA upstream 526977 3915751 ~ 3921269 (-) True CI01000034_03915853_03921269
TU195428 other downstream 151872 3234963 ~ 3236615 (-) False G172016
TU195214 other downstream 876966 2509813 ~ 2510031 (-) True G171834
TU195212 other downstream 876966 2510153 ~ 2511521 (-) True CI01000034_02510595_02511512
TU195221 other downstream 942194 2441821 ~ 2446293 (-) False G171835
TU195584 other upstream 2739 3391513 ~ 3397813 (-) False G172151
TU195571 other upstream 2915 3391689 ~ 3397648 (-) False G172151
TU195573 other upstream 2988 3391762 ~ 3397648 (-) False G172151
TU195577 other upstream 2988 3391762 ~ 3397648 (-) False G172151
TU195735 other upstream 777725 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272

Expression Profile