RNA id: TU195672


Basic Information

Item Value
RNA id TU195672
length 208
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G172227
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3575211 ~ 3575418 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGGAGAAGACAGTTGTGAGAAATCATAAAACTCCATATGGCGGCTGTAGGAACGCAAGTCCCGCCTATCCATTAAAAGAGCCAATTGCCTTTTTGATAAACCCGTCACAACATTCACAAGGTAGATGTACAACCAGTCCTGGCTTCCAATCCTGAGCTGTGATGGAAAGACAGTAAACAGAGAAAAGTAAGTAATGTCTGTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195671 lncRNA downstream 506 3574357 ~ 3574705 (-) True G172226
TU195670 lncRNA downstream 1026 3573915 ~ 3574185 (-) True G172225
TU195667 lncRNA downstream 3780 3571213 ~ 3571431 (-) True G172222
TU195612 lncRNA downstream 88287 3486714 ~ 3486924 (-) True G172170
TU195581 lncRNA downstream 123409 3391762 ~ 3451802 (-) True G172151
TU195673 lncRNA upstream 59 3575477 ~ 3575688 (-) True G172228
TU195679 lncRNA upstream 10929 3586347 ~ 3586576 (-) True G172234
TU195680 lncRNA upstream 12738 3588156 ~ 3588357 (-) True G172235
TU195685 lncRNA upstream 22174 3597592 ~ 3597878 (-) True G172240
TU195797 lncRNA upstream 275163 3850581 ~ 3850902 (-) True G172346
CI01000034_03285980_03289258.mRNA mRNA downstream 285953 3285790 ~ 3289258 (-) True CI01000034_03285980_03289258
CI01000034_03255619_03266388.mRNA mRNA downstream 307521 3255268 ~ 3267690 (-) True CI01000034_03255619_03266388
CI01000034_03250695_03253982.mRNA mRNA downstream 321009 3250402 ~ 3254202 (-) True CI01000034_03250695_03253982
CI01000034_03247806_03248810.mRNA mRNA downstream 326264 3247794 ~ 3248947 (-) True CI01000034_03247806_03248810
CI01000034_02875948_02953386.mRNA mRNA downstream 620691 2875658 ~ 2954520 (-) True CI01000034_02875948_02953386
CI01000034_03577874_03611044.mRNA mRNA upstream 2036 3577454 ~ 3611099 (-) True CI01000034_03577874_03611044
CI01000034_03659420_03661699.mRNA mRNA upstream 83872 3659290 ~ 3661699 (-) True CI01000034_03659420_03661699
CI01000034_03803160_03827982.mRNA mRNA upstream 227414 3802832 ~ 3827982 (-) True CI01000034_03803160_03827982
CI01000034_03911480_03913846.mRNA mRNA upstream 335657 3911075 ~ 3913846 (-) True CI01000034_03911480_03913846
CI01000034_03915853_03921269.mRNA mRNA upstream 340333 3915751 ~ 3921269 (-) True CI01000034_03915853_03921269
TU195584 other downstream 177398 3391513 ~ 3397813 (-) False G172151
TU195571 other downstream 177563 3391689 ~ 3397648 (-) False G172151
TU195573 other downstream 177563 3391762 ~ 3397648 (-) False G172151
TU195577 other downstream 177563 3391762 ~ 3397648 (-) False G172151
TU195428 other downstream 338596 3234963 ~ 3236615 (-) False G172016
TU195735 other upstream 591081 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195733 other upstream 640794 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU196079 other upstream 1417542 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 2213614 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 2213838 5789256 ~ 5789738 (-) True G172800

Expression Profile