RNA id: TU193485


Basic Information

Item Value
RNA id TU193485
length 212
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G170305
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3576427 ~ 3576638 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACTGTAAATTCCGATTTTTGCGCGCGCTGTGTTATCTGAGCTCTCGTCTTCTCCGTGGTCTCGTCCGACAGATTCAGCGGTAAGTGTTGAAATGTCAAATTTGTCAATTAAATGACTGTTTGTTTGTTTTTTTTATATGTTAGTGCGTGTAATTTAAAAGTATTAACCAAATACTGTTAGTTGCAGATTCTGTTGACATGTTGTTAGCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193347 lncRNA upstream 137588 3434136 ~ 3434287 (+) False G170172
TU193401 lncRNA upstream 279204 3294863 ~ 3297223 (+) True G170225
TU193459 lncRNA upstream 293255 3281406 ~ 3283172 (+) True G170280
TU193455 lncRNA upstream 316391 3259782 ~ 3260036 (+) True G170276
TU193453 lncRNA upstream 318358 3257790 ~ 3258069 (+) True G170274
TU193508 lncRNA downstream 21040 3597678 ~ 3597877 (+) True G170328
TU193510 lncRNA downstream 22064 3598702 ~ 3598939 (+) True G170330
TU193512 lncRNA downstream 23366 3600004 ~ 3600216 (+) True G170332
TU193516 lncRNA downstream 26376 3603014 ~ 3603228 (+) True G170336
TU193519 lncRNA downstream 30063 3606701 ~ 3606923 (+) True G170339
CI01000034_03556390_03566045.mRNA mRNA upstream 9902 3554625 ~ 3566525 (+) True CI01000034_03556390_03566045
CI01000034_03533995_03552021.mRNA mRNA upstream 24322 3533995 ~ 3552105 (+) True CI01000034_03533995_03552021
CI01000034_03432846_03437608.mRNA mRNA upstream 138594 3432846 ~ 3437833 (+) False CI01000034_03432846_03437608
CI01000034_03422028_03431218.mRNA mRNA upstream 144831 3421289 ~ 3431596 (+) True CI01000034_03422028_03431218
CI01000034_03407574_03419313.mRNA mRNA upstream 157036 3405952 ~ 3419391 (+) True CI01000034_03407574_03419313
CI01000034_03656686_03659087.mRNA mRNA downstream 80048 3656686 ~ 3659172 (+) True CI01000034_03656686_03659087
CI01000034_03670122_03684523.mRNA mRNA downstream 93305 3669943 ~ 3685216 (+) True CI01000034_03670122_03684523
CI01000034_03855726_03858565.mRNA mRNA downstream 278913 3855551 ~ 3859311 (+) False CI01000034_03855726_03858565
CI01000034_03869116_03883535.mRNA mRNA downstream 292478 3869116 ~ 3883690 (+) True CI01000034_03869116_03883535
CI01000034_03887718_03890074.mRNA mRNA downstream 310527 3887165 ~ 3890409 (+) True CI01000034_03887718_03890074
TU193348 other upstream 124578 3434136 ~ 3451849 (+) True G170172
TU192920 other upstream 1238737 2317973 ~ 2337690 (+) True G169806
TU192663 other upstream 1845250 1726510 ~ 1726632 (+) True G169586
TU192378 other upstream 2265549 1250219 ~ 1310878 (+) True G169340
TU192449 other upstream 2382867 1150297 ~ 1193560 (+) True G169394
TU193699 other downstream 548462 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193723 other downstream 618000 4194638 ~ 4194993 (+) True G170522

Expression Profile