RNA id: TU195679


Basic Information

Item Value
RNA id TU195679
length 230
lncRNA type intronic
GC content 0.39
exon number 1
gene id G172234
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3586347 ~ 3586576 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATGTAATGGGGTCATCAGTGCATTCACATGAATTTGTCACTCAATACCAGTATTTCAAATGCATTAAGCAGCTGTATTCTCAACAGGGTTCCAAAAACAGAAGAAAAGCAGTGTAAAGCCATGAGTAAACAAGACAAAACTAAAGATAACTATCCTTTGGGTGTAATGGAGCACCTCAGTAACTGCGTCAGAGACTGGTTTAGGTCTCAATTCACATTTAAGTTGTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195673 lncRNA downstream 10659 3575477 ~ 3575688 (-) True G172228
TU195672 lncRNA downstream 10929 3575211 ~ 3575418 (-) True G172227
TU195671 lncRNA downstream 11642 3574357 ~ 3574705 (-) True G172226
TU195670 lncRNA downstream 12162 3573915 ~ 3574185 (-) True G172225
TU195667 lncRNA downstream 14916 3571213 ~ 3571431 (-) True G172222
TU195680 lncRNA upstream 1580 3588156 ~ 3588357 (-) True G172235
TU195685 lncRNA upstream 11016 3597592 ~ 3597878 (-) True G172240
TU195797 lncRNA upstream 264005 3850581 ~ 3850902 (-) True G172346
TU195765 lncRNA upstream 284152 3870728 ~ 3874382 (-) True G172314
TU195763 lncRNA upstream 342329 3928905 ~ 3931285 (-) True G172312
CI01000034_03285980_03289258.mRNA mRNA downstream 297089 3285790 ~ 3289258 (-) True CI01000034_03285980_03289258
CI01000034_03255619_03266388.mRNA mRNA downstream 318657 3255268 ~ 3267690 (-) True CI01000034_03255619_03266388
CI01000034_03250695_03253982.mRNA mRNA downstream 332145 3250402 ~ 3254202 (-) True CI01000034_03250695_03253982
CI01000034_03247806_03248810.mRNA mRNA downstream 337400 3247794 ~ 3248947 (-) True CI01000034_03247806_03248810
CI01000034_02875948_02953386.mRNA mRNA downstream 631827 2875658 ~ 2954520 (-) True CI01000034_02875948_02953386
CI01000034_03659420_03661699.mRNA mRNA upstream 72714 3659290 ~ 3661699 (-) True CI01000034_03659420_03661699
CI01000034_03803160_03827982.mRNA mRNA upstream 216256 3802832 ~ 3827982 (-) True CI01000034_03803160_03827982
CI01000034_03911480_03913846.mRNA mRNA upstream 324499 3911075 ~ 3913846 (-) True CI01000034_03911480_03913846
CI01000034_03915853_03921269.mRNA mRNA upstream 329175 3915751 ~ 3921269 (-) True CI01000034_03915853_03921269
CI01000034_03956763_03960891.mRNA mRNA upstream 370187 3956763 ~ 3960891 (-) True CI01000034_03956763_03960891
TU195584 other downstream 188534 3391513 ~ 3397813 (-) False G172151
TU195571 other downstream 188699 3391689 ~ 3397648 (-) False G172151
TU195573 other downstream 188699 3391762 ~ 3397648 (-) False G172151
TU195577 other downstream 188699 3391762 ~ 3397648 (-) False G172151
TU195428 other downstream 349732 3234963 ~ 3236615 (-) False G172016
TU195735 other upstream 579923 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195733 other upstream 629636 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU196079 other upstream 1406384 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 2202456 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 2202680 5789256 ~ 5789738 (-) True G172800

Expression Profile