RNA id: TU195853


Basic Information

Item Value
RNA id TU195853
length 349
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G172402
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4212454 ~ 4212802 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTCACTGGAACTAAGGGGCCAAGCCCAACCCCTGAAAAACAACCCCACACCATAATCCCCCCTCCACCAAACTTTACACTTGGCACAATGCAGTCAGGCAAGTACCGTTCTCCTGGCAACCGCCAAACCCAGACTCGTCCATCGGATTGCCAGACAGAGAAGCGTGATTCATCACTCCAGAGAACACGTCTCCACTGCTCTAGAGTCCAGTGGCGGCGTGCTTTACACCACTGCATCCGACGCTTTGCATTGCACTTGGTGATGTAAGGCTTGGATGCAGTTGCTCGGCCATGGTAACCCATTCCATGAAGCTCTCTACACACTGTTCTTGAGCTAATCTGAAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195849 lncRNA downstream 10402 4201813 ~ 4202052 (-) True G172398
TU195835 lncRNA downstream 85608 4125119 ~ 4126846 (-) True G172384
TU195830 lncRNA downstream 95240 4116979 ~ 4117214 (-) True G172379
TU195829 lncRNA downstream 95520 4116483 ~ 4116934 (-) True G172378
TU195748 lncRNA downstream 148293 4063892 ~ 4064161 (-) True G172297
TU195863 lncRNA upstream 45753 4258555 ~ 4258786 (-) True G172411
TU195864 lncRNA upstream 46464 4259266 ~ 4259613 (-) True G172412
TU195865 lncRNA upstream 48168 4260970 ~ 4261263 (-) True G172413
TU195866 lncRNA upstream 50524 4263326 ~ 4263835 (-) True G172414
TU195867 lncRNA upstream 52281 4265083 ~ 4271495 (-) True G172415
CI01000034_04174469_04189564.mRNA mRNA downstream 22890 4174416 ~ 4189564 (-) True CI01000034_04174469_04189564
CI01000034_04165535_04172272.mRNA mRNA downstream 40182 4165373 ~ 4172272 (-) False CI01000034_04165535_04172272
CI01000034_04154954_04164874.mRNA mRNA downstream 47580 4154651 ~ 4164874 (-) True CI01000034_04154954_04164874
CI01000034_04101415_04114654.mRNA mRNA downstream 97800 4100622 ~ 4114654 (-) True CI01000034_04101415_04114654
CI01000034_04090497_04095923.mRNA mRNA downstream 116531 4090232 ~ 4095923 (-) True CI01000034_04090497_04095923
CI01000034_04216451_04218876.mRNA mRNA upstream 3432 4216234 ~ 4221881 (-) False CI01000034_04216451_04218876
CI01000034_04239062_04242494.mRNA mRNA upstream 25969 4238771 ~ 4242640 (-) True CI01000034_04239062_04242494
CI01000034_04318823_04319740.mRNA mRNA upstream 105742 4318544 ~ 4320127 (-) True CI01000034_04318823_04319740
CI01000034_04350907_04363668.mRNA mRNA upstream 137804 4350606 ~ 4363683 (-) True CI01000034_04350907_04363668
CI01000034_04370706_04374491.mRNA mRNA upstream 157824 4370626 ~ 4375413 (-) True CI01000034_04370706_04374491
TU195735 other downstream 40284 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195584 other downstream 814641 3391513 ~ 3397813 (-) False G172151
TU195733 other upstream 3410 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU196079 other upstream 780158 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 1576230 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 1576454 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 1584768 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363

Expression Profile