RNA id: TU195994


Basic Information

Item Value
RNA id TU195994
length 976
lncRNA type intronic
GC content 0.37
exon number 2
gene id G172522
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4553301 ~ 4554337 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTTTTGGCGCACAAAAAGTATTTTTGTCGCTTCATAACATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTTAGTAGCTTTCTGGGCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGTCTTGAAGGTCTTATAGGTTTGGAACGACATGAGGGTGAGTAATTAATGACAGATTTTAATTTTTGGGTGAACTAACCCTTTAATGTACAAAAACAATGACAAAGGATAACCAAACTCACATTTACCTTTTCATAAACATGATCTACCGCCAAAAAATGACATTAAACCAAGAGGAACGATTATTATTTTACACTAAGCACTTCTTCCCCAAAGAAAAACAACTATAAAAACACTTAACGTGGCAATGTACTAAGATAGTGGAAGATCAAATTCACTTTGTACCACTGATTACAGATACTACCCACAAACAAACTGATGACCCTAGAATATATACACAATGATTTTATTTTAACGTGGCACTAAAATGCCGTCATAGTCCTCAGATTGAGACAATTTAGGCCACCAGAACTGCAGCGAGGGAGACTGATGGAATTTCTCTGTCTTACTATATTCAGGAAAAGTGGGCAGCAGGGAGGCCATCTGGTGTAACGGTGGCATTCATCAGTCAGAACCTGAGATGCCTGTCACCAGTCCACTGGGTACAGCTGTGCCAGCCTGCCAATGAAAGCTTTAAACTTAGAGCTATGAAATGATAGTTCAACCCTTTAAACTCTCATCCTAGGATTCATTTCACACGTACTACAGCAGTATGTCTTTACAAGTATAAGTACATTTTGTATAGGCTAGTGGTATTGCATATCCTAATCTATTGTGCAAACTCATGTTTCCATAAATGCAAGTCTTAAGATGGTAAAAAATATGACAAACTACTATTCTCATGATTTTGACAGTGTACCAGACTAAAGTTAATAAACACATCACAGACAAAACAACTGGGATTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195988 lncRNA downstream 22207 4530337 ~ 4531094 (-) True G172516
TU195983 lncRNA downstream 32461 4520313 ~ 4520840 (-) True G172511
TU195981 lncRNA downstream 35668 4516903 ~ 4517633 (-) True G172509
TU195980 lncRNA downstream 36584 4516493 ~ 4516717 (-) True G172508
TU195979 lncRNA downstream 36905 4515871 ~ 4516396 (-) True G172507
TU195930 lncRNA upstream 8957 4563294 ~ 4577218 (-) True G172458
TU196000 lncRNA upstream 9937 4564274 ~ 4565093 (-) True G172527
TU196008 lncRNA upstream 45911 4600248 ~ 4600464 (-) True G172535
TU196012 lncRNA upstream 51736 4606073 ~ 4606447 (-) True G172539
TU196014 lncRNA upstream 53186 4607523 ~ 4607776 (-) True G172541
CI01000034_04466151_04467388.mRNA mRNA downstream 85821 4465852 ~ 4467480 (-) True CI01000034_04466151_04467388
CI01000034_04451917_04454531.mRNA mRNA downstream 98770 4451459 ~ 4454531 (-) True CI01000034_04451917_04454531
CI01000034_04431146_04446849.mRNA mRNA downstream 106133 4431146 ~ 4447168 (-) True CI01000034_04431146_04446849
CI01000034_04392399_04400096.mRNA mRNA downstream 153205 4392200 ~ 4400096 (-) True CI01000034_04392399_04400096
CI01000034_04376314_04386958.mRNA mRNA downstream 166343 4376314 ~ 4386958 (-) True CI01000034_04376314_04386958
CI01000034_04630595_04640739.mRNA mRNA upstream 76204 4630541 ~ 4640987 (-) True CI01000034_04630595_04640739
CI01000034_04652096_04678983.mRNA mRNA upstream 97597 4651934 ~ 4679037 (-) True CI01000034_04652096_04678983
CI01000034_04690669_04706837.mRNA mRNA upstream 136150 4690487 ~ 4706959 (-) True CI01000034_04690669_04706837
CI01000034_04710539_04725888.mRNA mRNA upstream 155076 4709413 ~ 4725888 (-) True CI01000034_04710539_04725888
CI01000034_04823597_04824920.mRNA mRNA upstream 268984 4823321 ~ 4825135 (-) True CI01000034_04823597_04824920
TU195733 other downstream 335559 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 381131 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195571 other downstream 1155653 3391689 ~ 3397648 (-) False G172151
TU196079 other upstream 438623 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 1234695 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 1234919 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 1243233 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 1243233 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile