RNA id: TU196008


Basic Information

Item Value
RNA id TU196008
length 217
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G172535
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4600248 ~ 4600464 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAAATAAGACCTCTTGAAACCATTATTCATCTCAGTGCAGTTATGAAAAATGATAGCTCATATAGGCTTAAAAATTGATTGCCTGAAGAACTGATCTGTCATCAAGCTTTGATAAATCTTAGCTGTGAATGGCTTTCAGTATGATGTTTTTGTTTCCTTCAAAAGTCATCGTTGAAACCTTATCCTTCTGCTCTTCAGCCACACCCATTTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195930 lncRNA downstream 23030 4563294 ~ 4577218 (-) True G172458
TU196000 lncRNA downstream 35155 4564274 ~ 4565093 (-) True G172527
TU195994 lncRNA downstream 45911 4553301 ~ 4554337 (-) True G172522
TU195988 lncRNA downstream 69154 4530337 ~ 4531094 (-) True G172516
TU195983 lncRNA downstream 79408 4520313 ~ 4520840 (-) True G172511
TU196012 lncRNA upstream 5609 4606073 ~ 4606447 (-) True G172539
TU196014 lncRNA upstream 7059 4607523 ~ 4607776 (-) True G172541
TU196015 lncRNA upstream 7515 4607979 ~ 4608216 (-) True G172542
TU196024 lncRNA upstream 21678 4622142 ~ 4622387 (-) True G172551
TU196112 lncRNA upstream 240801 4841265 ~ 4841496 (-) True G172626
CI01000034_04466151_04467388.mRNA mRNA downstream 132768 4465852 ~ 4467480 (-) True CI01000034_04466151_04467388
CI01000034_04451917_04454531.mRNA mRNA downstream 145717 4451459 ~ 4454531 (-) True CI01000034_04451917_04454531
CI01000034_04431146_04446849.mRNA mRNA downstream 153080 4431146 ~ 4447168 (-) True CI01000034_04431146_04446849
CI01000034_04392399_04400096.mRNA mRNA downstream 200152 4392200 ~ 4400096 (-) True CI01000034_04392399_04400096
CI01000034_04376314_04386958.mRNA mRNA downstream 213290 4376314 ~ 4386958 (-) True CI01000034_04376314_04386958
CI01000034_04630595_04640739.mRNA mRNA upstream 30077 4630541 ~ 4640987 (-) True CI01000034_04630595_04640739
CI01000034_04652096_04678983.mRNA mRNA upstream 51470 4651934 ~ 4679037 (-) True CI01000034_04652096_04678983
CI01000034_04690669_04706837.mRNA mRNA upstream 90023 4690487 ~ 4706959 (-) True CI01000034_04690669_04706837
CI01000034_04710539_04725888.mRNA mRNA upstream 108949 4709413 ~ 4725888 (-) True CI01000034_04710539_04725888
CI01000034_04823597_04824920.mRNA mRNA upstream 222857 4823321 ~ 4825135 (-) True CI01000034_04823597_04824920
TU195733 other downstream 382506 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 428078 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195571 other downstream 1202600 3391689 ~ 3397648 (-) False G172151
TU196079 other upstream 392496 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 1188568 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 1188792 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 1197106 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 1197106 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile