RNA id: TU196112


Basic Information

Item Value
RNA id TU196112
length 232
lncRNA type intronic
GC content 0.40
exon number 1
gene id G172626
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4841265 ~ 4841496 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAACTTGCAGAGCGTTGTTGTAGCCGCTAGGAGGCTGCTCAGGTAGCAGCGGCAGTAGAATTAGTCTGGTTAAGAGTTGTTCTACCACTGAAATAAATGTAGAGACATTATTTTAAGGTCGAAAAACTACATAGTGTTGCTTTAAAAACTAAGCTCAGAATCGATTTGCGATGCATTTGGAAAATATCAGAAACAATCCATGAATCGCGATGCATCGATAGTACTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196024 lncRNA downstream 218878 4622142 ~ 4622387 (-) True G172551
TU196015 lncRNA downstream 233049 4607979 ~ 4608216 (-) True G172542
TU196014 lncRNA downstream 233489 4607523 ~ 4607776 (-) True G172541
TU196012 lncRNA downstream 234818 4606073 ~ 4606447 (-) True G172539
TU196008 lncRNA downstream 240801 4600248 ~ 4600464 (-) True G172535
TU196115 lncRNA upstream 1958 4843454 ~ 4845428 (-) True G172627
TU196124 lncRNA upstream 106385 4947881 ~ 4948092 (-) True G172633
TU196095 lncRNA upstream 143382 4984878 ~ 4986139 (-) True G172609
TU196082 lncRNA upstream 145843 4987339 ~ 4992240 (-) True G172596
TU196134 lncRNA upstream 210904 5052400 ~ 5052726 (-) True G172643
CI01000034_04823597_04824920.mRNA mRNA downstream 16130 4823321 ~ 4825135 (-) True CI01000034_04823597_04824920
CI01000034_04710539_04725888.mRNA mRNA downstream 115377 4709413 ~ 4725888 (-) True CI01000034_04710539_04725888
CI01000034_04690669_04706837.mRNA mRNA downstream 134306 4690487 ~ 4706959 (-) True CI01000034_04690669_04706837
CI01000034_04652096_04678983.mRNA mRNA downstream 162228 4651934 ~ 4679037 (-) True CI01000034_04652096_04678983
CI01000034_04630595_04640739.mRNA mRNA downstream 200278 4630541 ~ 4640987 (-) True CI01000034_04630595_04640739
CI01000034_04870434_04878415.mRNA mRNA upstream 28865 4870361 ~ 4878415 (-) True CI01000034_04870434_04878415
CI01000034_04887739_04917230.mRNA mRNA upstream 46221 4887717 ~ 4917230 (-) True CI01000034_04887739_04917230
CI01000034_04921458_04934523.mRNA mRNA upstream 79673 4921169 ~ 4934523 (-) True CI01000034_04921458_04934523
CI01000034_04951993_04959847.mRNA mRNA upstream 110034 4951530 ~ 4959847 (-) True CI01000034_04951993_04959847
CI01000034_04978655_04981311.mRNA mRNA upstream 136578 4978074 ~ 4981311 (-) True CI01000034_04978655_04981311
TU195733 other downstream 623523 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 669095 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195571 other downstream 1443617 3391689 ~ 3397648 (-) False G172151
TU196079 other upstream 151464 4992960 ~ 4994943 (-) True G172593
TU196307 other upstream 947536 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 947760 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 956074 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 956074 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile