RNA id: TU196134


Basic Information

Item Value
RNA id TU196134
length 327
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G172643
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5052400 ~ 5052726 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCGATGAACCTGTTGCAGAGATCGATGCATCTCCTCTAACTCACTGTATACGCTTGAGAGGAGTGGAAAAACTGCTCTGAAAATAGCCAAGAACACAACAAAAATGCTATCCTACGGGCAACAGATAATTCGCTTTCCTGAAGGAAATGAAATCTGATGAAATCACACGTAGCATGCTGATATGAGCATACAAGACGTATTTCTTGGGGCGGTGCTAAGTGCTACTGGCCAATAAAAGGCATGATGGTATAAATGCTTCAGACATTCGCCACACCAGAGGTGTTCCCATAGCAACAGTACGCAGCATTGAGTGAACCTATGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196082 lncRNA downstream 60160 4987339 ~ 4992240 (-) True G172596
TU196095 lncRNA downstream 66261 4984878 ~ 4986139 (-) True G172609
TU196124 lncRNA downstream 104308 4947881 ~ 4948092 (-) True G172633
TU196115 lncRNA downstream 206972 4843454 ~ 4845428 (-) True G172627
TU196112 lncRNA downstream 210904 4841265 ~ 4841496 (-) True G172626
TU196135 lncRNA upstream 400 5053126 ~ 5053360 (-) True G172644
TU196137 lncRNA upstream 981 5053707 ~ 5054597 (-) True G172645
TU196211 lncRNA upstream 47555 5100281 ~ 5100485 (-) True G172706
TU196219 lncRNA upstream 99303 5152029 ~ 5152695 (-) True G172714
TU196221 lncRNA upstream 102760 5155486 ~ 5155685 (-) True G172716
CI01000034_05006303_05007855.mRNA mRNA downstream 44539 5006117 ~ 5007861 (-) True CI01000034_05006303_05007855
CI01000034_04997343_04999344.mRNA mRNA downstream 53056 4997318 ~ 4999344 (-) True CI01000034_04997343_04999344
CI01000034_04988799_04990480.mRNA mRNA downstream 61920 4988681 ~ 4990480 (-) False CI01000034_04988799_04990480
CI01000034_04978655_04981311.mRNA mRNA downstream 71089 4978074 ~ 4981311 (-) True CI01000034_04978655_04981311
CI01000034_04951993_04959847.mRNA mRNA downstream 92553 4951530 ~ 4959847 (-) True CI01000034_04951993_04959847
CI01000034_05093584_05096564.mRNA mRNA upstream 40336 5093062 ~ 5096564 (-) True CI01000034_05093584_05096564
CI01000034_05147520_05150640.mRNA mRNA upstream 94280 5147006 ~ 5150640 (-) True CI01000034_05147520_05150640
CI01000034_05167889_05175190.mRNA mRNA upstream 115163 5167889 ~ 5175312 (-) True CI01000034_05167889_05175190
CI01000034_05176199_05177220.mRNA mRNA upstream 123240 5175966 ~ 5177220 (-) False CI01000034_05176199_05177220
CI01000034_05189944_05197158.mRNA mRNA upstream 137158 5189884 ~ 5197531 (-) True CI01000034_05189944_05197158
TU196079 other downstream 57457 4992960 ~ 4994943 (-) True G172593
TU195733 other downstream 834658 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 880230 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195571 other downstream 1654752 3391689 ~ 3397648 (-) False G172151
TU196307 other upstream 736306 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 736530 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 744844 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 744844 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile