RNA id: TU196219


Basic Information

Item Value
RNA id TU196219
length 667
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G172714
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5152029 ~ 5152695 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGTTCTGAGTTTTCGTTTAGGCTTTATAGGCTTTTGGGTATATTTAGCCATGCCCACTTTCTAAATGGCCCTGTTACAGCGACCCAAATGGTAAAGTTCAACTTTTTTTGATAATTATTGATCTAGAGAGTCCAGAGAATTGTCCTGCACTGGTTTCATTCCGATCGGGCAAAAAACCTAGGACTAGTTCGCAAAAGTAGGTTTTTCAAATATTTGCAAATAATTAATGAATGGTTTGATTGACAGCATTGATTCTTGAGGCAAAGTTGTTCAGAAAGACGAGATCTATCCAATGATATGCATATTATGTGGATCTGTTAAACACCACGTGATTACTGAGGCATAAAAACTCGTTAGCGCCAACTAGTGGCCGATTTCTTTCAAAATTCTTACAGACCTCTAGGCCCATGAGTCGAACATGCCCACCGAGTTTCGCTCCAATCGGCCTCCATTAACCTTGTCTAATAGGTGCTCAAACTTCATTGGCCAATGGCGGCCATGTTTTTTGAGATACGCCAATGTCCTCATAGACCATCATGCCCCCTTGGACCAAGACACTGCATGCCAAATTTCAAGTCAATCGGACTAACGGTCAGGTGGATATAGCTCTTTTCATGTTTTTTTCAAGTTATAGCGCCACCTAGTGTCCAATCGACGCGATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196211 lncRNA downstream 51544 5100281 ~ 5100485 (-) True G172706
TU196137 lncRNA downstream 97432 5053707 ~ 5054597 (-) True G172645
TU196135 lncRNA downstream 98669 5053126 ~ 5053360 (-) True G172644
TU196134 lncRNA downstream 99303 5052400 ~ 5052726 (-) True G172643
TU196082 lncRNA downstream 159789 4987339 ~ 4992240 (-) True G172596
TU196221 lncRNA upstream 2791 5155486 ~ 5155685 (-) True G172716
TU196224 lncRNA upstream 8154 5160849 ~ 5161127 (-) True G172719
TU196196 lncRNA upstream 22919 5212828 ~ 5214052 (-) True G172691
TU196185 lncRNA upstream 59256 5211951 ~ 5217002 (-) True G172680
TU196276 lncRNA upstream 359833 5512528 ~ 5512796 (-) True G172771
CI01000034_05147520_05150640.mRNA mRNA downstream 1389 5147006 ~ 5150640 (-) True CI01000034_05147520_05150640
CI01000034_05093584_05096564.mRNA mRNA downstream 55465 5093062 ~ 5096564 (-) True CI01000034_05093584_05096564
CI01000034_05006303_05007855.mRNA mRNA downstream 144168 5006117 ~ 5007861 (-) True CI01000034_05006303_05007855
CI01000034_04997343_04999344.mRNA mRNA downstream 152685 4997318 ~ 4999344 (-) True CI01000034_04997343_04999344
CI01000034_04988799_04990480.mRNA mRNA downstream 161549 4988681 ~ 4990480 (-) False CI01000034_04988799_04990480
CI01000034_05167889_05175190.mRNA mRNA upstream 15194 5167889 ~ 5175312 (-) True CI01000034_05167889_05175190
CI01000034_05176199_05177220.mRNA mRNA upstream 23271 5175966 ~ 5177220 (-) False CI01000034_05176199_05177220
CI01000034_05189944_05197158.mRNA mRNA upstream 37189 5189884 ~ 5197531 (-) True CI01000034_05189944_05197158
CI01000034_05236100_05264059.mRNA mRNA upstream 82437 5235132 ~ 5264546 (-) True CI01000034_05236100_05264059
CI01000034_05269689_05276880.mRNA mRNA upstream 115530 5268225 ~ 5277297 (-) True CI01000034_05269689_05276880
TU196079 other downstream 157086 4992960 ~ 4994943 (-) True G172593
TU195733 other downstream 934287 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 979859 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195573 other downstream 1754381 3391762 ~ 3397648 (-) False G172151
TU196307 other upstream 636337 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 636561 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 644875 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 644875 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile