RNA id: TU196276


Basic Information

Item Value
RNA id TU196276
length 240
lncRNA type intronic
GC content 0.42
exon number 2
gene id G172771
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5512528 ~ 5512796 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTAAGATCCCGAAGATCACGGGCATCCAGTATGGTTTACCGGCCTTGACCCTTACGCACAGAGATTGTTCCAGATTCTCTGAATCTTTGGATGATATTATGCACTGTAGATGATGATGATAACTTCAAACTCTTTGCAATTTTTATCTGAGAAACTCCTTTCTGATATTGCTCCACTATTTTTCGTGCCCATCTTGACTTCTGAGAGACACTGCCACTCTGAGAGGCTCTTTTTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196185 lncRNA downstream 295526 5211951 ~ 5217002 (-) True G172680
TU196196 lncRNA downstream 298476 5212828 ~ 5214052 (-) True G172691
TU196224 lncRNA downstream 351401 5160849 ~ 5161127 (-) True G172719
TU196221 lncRNA downstream 356843 5155486 ~ 5155685 (-) True G172716
TU196219 lncRNA downstream 359833 5152029 ~ 5152695 (-) True G172714
TU196201 lncRNA upstream 16103 5528899 ~ 5535870 (-) True G172696
TU196197 lncRNA upstream 27089 5539885 ~ 5557975 (-) True G172692
TU196281 lncRNA upstream 64647 5577443 ~ 5577774 (-) True G172776
TU196287 lncRNA upstream 213585 5726381 ~ 5765635 (-) True G172782
TU196306 lncRNA upstream 276460 5789256 ~ 5789528 (-) False G172800
CI01000034_05491347_05493196.mRNA mRNA downstream 19273 5491055 ~ 5493255 (-) True CI01000034_05491347_05493196
CI01000034_05467255_05480455.mRNA mRNA downstream 32073 5467255 ~ 5480455 (-) True CI01000034_05467255_05480455
CI01000034_05462429_05465076.mRNA mRNA downstream 47452 5462380 ~ 5465076 (-) True CI01000034_05462429_05465076
CI01000034_05441613_05448148.mRNA mRNA downstream 64380 5441538 ~ 5448148 (-) True CI01000034_05441613_05448148
CI01000034_05428767_05438942.mRNA mRNA downstream 73315 5427529 ~ 5439213 (-) True CI01000034_05428767_05438942
CI01000034_05601190_05607136.mRNA mRNA upstream 88336 5601132 ~ 5607169 (-) True CI01000034_05601190_05607136
CI01000034_05681798_05699059.mRNA mRNA upstream 168697 5681493 ~ 5699120 (-) True CI01000034_05681798_05699059
CI01000034_05721684_05742044.mRNA mRNA upstream 208767 5721563 ~ 5742044 (-) True CI01000034_05721684_05742044
CI01000034_05744195_05777951.mRNA mRNA upstream 231228 5744024 ~ 5777951 (-) True CI01000034_05744195_05777951
CI01000034_05795972_05811363.mRNA mRNA upstream 283039 5795835 ~ 5811781 (-) False CI01000034_05795972_05811363
TU196079 other downstream 517585 4992960 ~ 4994943 (-) True G172593
TU195733 other downstream 1294786 4216212 ~ 4217742 (-) True CI01000034_04216451_04218876
TU195735 other downstream 1340358 4166499 ~ 4172170 (-) True CI01000034_04165535_04172272
TU195573 other downstream 2114880 3391762 ~ 3397648 (-) False G172151
TU196307 other upstream 276236 5789032 ~ 5789528 (-) False G172800
TU196308 other upstream 276460 5789256 ~ 5789738 (-) True G172800
TU196179 other upstream 284774 5797570 ~ 5811315 (-) False CI01000034_05795972_05811363
TU196180 other upstream 284774 5797570 ~ 5811315 (-) True CI01000034_05795972_05811363

Expression Profile