RNA id: TCONS_00001262


Basic Information

Item Value
RNA id TCONS_00001262
length 4129
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_000771
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56502706 ~ 56529192 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGCCAAATAGGTGTGTCTTTACCGTGTCTTGAAAACTGCCATAGTCTCAGGCAGTTTGGAGTCTGGTAAACTTTTCCCCAAAAGGGCTGAAAATGAGGTTGTAATAATTATAAAGGgactttaatcatttttttttttcaccgaCTGAAATAAGGGACAGAAATACAATCATAATGGCATCAGCATATGAAGAGAATTTGAGGATTGTTCTTCTTGGTAAAACCGGATCAGGAAAGAGCTCAACAGGAAACACTATTTTGGGAAGAGATGCCTTCAGAGTCAGTTTTCTCTCATCCACTCAAACATGTGAGAGAAGAAATGCGGTGATTTCAGGAAGAAACATCTCAGTAATCGACACCCCTGGACTGTTAAACGTCAGGTGGTACAAGCATTTACAGAACAAACTCAAGCAGGATATAGAGAAATACCTGGAGAAGTGTGCTCCGGGTCCGAACGTGTTTCTGCTGGTCATGAGGCCCAATGGCAGACACACAGATGAAGACGCAAACACTGTCAAGTGGATTCAGGAGAACTTTGGAGAAGAAGCTGTTCGTTATACCATGGTTCTGTTCACTCATGTTGATTTGCTGACGGATGAATCTATGGATGATTATATTAGACAAAGTCTGGATCTAAAGTTACTGATTGACAGCTGTGGTGGAAAATTTCACACGGTGAACAATCAGGATAGAAACAATCCGAATCAGGTCACTGAGCTGCTGGAGAAGATTGAACAACTGGAGAGAGAATTTATGATGGTGCTACTTTCAAGATGAGTGATGACTTCCTGTCTAATCCCGCCCCCTTTTAGGGCGGGACCTCCTATCTAAGCCACGCccttttatatgcattttttaaaacatgtttttacgATGATTTGATTCTTAtcaatttattctttcatttattttcgttCAGCTtagtcggtcctggaggtcctggtgttctgcagattttagctccaacttgcctcaacacacctgcaaggatgtttctagaaagcctaataaaagcttgattagctagcccaggcgggattggggttggaactaaactttgcaggacaccggccctccaggaccgagtttggacatgcctagcttagtccctttattcatcagagatcaccacagtggattgaaccaccaactattccagcatatgttttacacagcgcatgcccttccagctgcaacccagtatgggAAACACtgatacacgctcattcacacacacactcatacactacggacaatttaattaatccagttcccctatagcgcatgtgtttggactgtgggggaaaccggagcaccctgagcaaacccacaccaacacggagaggacatgcaaactccacacagaaatgccaactgacccagccgggactcgaaccagcgaccttcttacggtgatgaggccacagtgctgaccactgagccacacctgattaaacatttcaaaataaataaataaatgaaagaaaaaaagatgaataCCTTGATTTTTGATATCTGCGTCCTTCCTGCAGGAGGGGATTTTTACAgcttttattgatttaaatgggtgtattttcagtgtgaacactaGATGGCGCTACGCTAGATGACATGTGCTGGAGTTTTGTAAATTCGTCTCCGTTTGATGTTTAAGGCAGTTTAATATGCAGAATGCCTACAGTGATTTGAAAGCacaataatatttaagttaaatccTCATTTgggcattttttattttcattaatatttcttttttaatgaaatgagtggaaaaaaaatgtgtgggaaaaaaaaaacaaaattgagTGATTTTTGAAAGTGTTTGCGTTCCCTCGTAAAACTATTCGACAAACACTTCACTACATACATaacaaccctcctgtttttgccgGGATTCTCCAGGAATAAAAATATGAGAAAATATGGAAAATACCTAATAATAGAacaatggtaaaatacgggagaatgccggcaaaaaaaaatgcttacctatcactcgtttttttttttccacccatttttttctccaccatcacgtcccttcactacggagacccggaagggacgtgatggtggggaaaaaaatgGTGGAAGAAACAAAAACTGGATGGAAAAAAAAGAGTGAtaggaaaacatattttaaagtttttttgtgttccctcgcaaaaatgtttctccacaaacacttcctgttcacttcattcatATAAATGTAGGGCAGGGTTTGTTTTGTCCACAAGATGTCGCTATGACACTGTTTTCTGATGTTCTTTTGTGTTGTTTGAGCCTCTTGGCATATCATAGTGCACCATATTTTCCTCAGTTTGTGTTATCAACAATGATAGGTAAGACGTGTTCATGATAGTAGGACCTTTATCTAAAATACATCTTTGTTGTCAATGATCAAAAGTTCTGTTTACTGAGATATTCTGTGTACTAAATTGTTAAAGAGCAAATGCGGTGGTGCTAGAGATTCCCCTATAGCatgtttttgccgaaattctcctgtactttaccattctatcccactatcatcctatcattaagtatCTTCCCATATTTCTGATATATTTTTAGTCTTGAAAGCACGCTGACATCAAAATTAAAATCACTTTCTTCACATTAAAGCTGTGCATCAATCGTCacctttcatatgcaacctctgatccagtgaatgcatgtataagcgctgactgacagatgaGCTTCGTACAATATTATCctagatcagcttctgtacacgccatttacagaggagcaaaAGGGCAGGACACTTTGGGATTCgggtgcatgtttaaacagacaaatacactgaataatatgtaaacgtcttcgtcctgcatgttttatttaaaacagcaaattttCTCTTAAATAAGCACCTCTGTTatctaatgaaaataaaaaaaatacatataaacaacaAAAAGTCAATATTTAGATGCATGCAAGAACTTCAAGAAAGAAAGATGACATTTTTAAGAATTGTGAAATGTTAGTCCGGTGGTTTGTAAACTGTGTACATGTGATGAGGCTTTTAAATCTGACACAGAGAGACTTCAGAATCGTTGTAAAACCCAAATCCTGCATAGAGGGGTTCAGTGAATGTAGTGTTGaacgtgtatatgtgtgtgagtgtgtgtgcgtcagagatgctgtaaaaggacagACGACCTGACGACACATCTAGATAGACCCCTACTCTATTGGATAAAGAGGAAGAGGGAGGAATAGGTGTGCTGTTAGCCTTCCCATCATGCCACGCAGAGAAAATCGTATCGCAAAAGTACAGATTCCAGGACTTATTATTAAGACCGAAGCGACAGTCAATTCCTCCTTTCCTCTGGATCCCTTTATATGCCACCGCTGCGTGACCCCAGCCTGTCAACTTagcctcccagtaacagcgtccagtcAGAGTCTCTGCACTCAGAATCTGCTCATAGTtctcaaatctgtctggatgatcaggatacggctgatgaTCTCTCACATGCGTTCCCCTTCTGTTGTCCTCAGACACAATCACgcgagtgtgtgctgtgtttggatccagtgaGAGACTACAGGCATCTGCACACAAGGAGAGAGAATACAGCTATAACTGTACAGGACTATTCGCTGGGCTTTAGATGAGGGAGATATAAATAGCGCTGGAAGTGCTTCCAGGACAGGTTTAAAAACTGCCAAAtaactcattaaaataattaaatatgcaaagatatgtatatttgtgtgtgtttgtagacaTACATTTTCGCATTCCATGTGTGATCCTGAAATGCCCTCCATGATCTACACTGGacagacaaaaacaacaaaacattagagGAAATTAATGACtttaatcatttataaataatcattgatacatacatatattacaccaacttatccagcatatgttttacgcagcaaatgccctcacagctgcaacccatcactgggaagcatccacactctcatacacactcattcacacacacgctgtggttaatttagccttcccaattcacctatagcgcaggtCGTTggacttggaggaaacccaccaacacagggagaacatgcaaactccacacagaaacgccagctgaggctcaaaccagagacctttttgctgtgag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000189181

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003235 lncRNA upstream 791710 55714918 ~ 55729126 (+) True XLOC_000760
TCONS_00003236 lncRNA upstream 799421 55717578 ~ 55721415 (+) True XLOC_000761
TCONS_00003234 lncRNA upstream 841389 55678912 ~ 55679447 (+) True XLOC_000758
TCONS_00003233 lncRNA upstream 853476 55666862 ~ 55667360 (+) True XLOC_000757
TCONS_00003231 lncRNA upstream 1043701 55456363 ~ 55477135 (+) False XLOC_000745
TCONS_00003238 lncRNA downstream 32034 56561226 ~ 56604170 (+) False XLOC_000772
TCONS_00003239 lncRNA downstream 32061 56561253 ~ 56604352 (+) True XLOC_000772
TCONS_00003240 lncRNA downstream 33635 56562827 ~ 56564352 (+) True XLOC_000773
TCONS_00003241 lncRNA downstream 40322 56569514 ~ 56603810 (+) True XLOC_000774
TCONS_00003243 lncRNA downstream 131005 56660197 ~ 56662651 (+) False XLOC_000775
TCONS_00001259 mRNA upstream 52235 56463494 ~ 56468601 (+) True XLOC_000770
TCONS_00001258 mRNA upstream 62799 56447107 ~ 56458037 (+) True XLOC_000769
TCONS_00001257 mRNA upstream 200267 56274613 ~ 56320569 (+) True XLOC_000767
TCONS_00001256 mRNA upstream 254105 56229674 ~ 56266731 (+) True XLOC_000766
TCONS_00001255 mRNA upstream 335908 56180416 ~ 56184928 (+) True XLOC_000765
TCONS_00001263 mRNA downstream 226344 56755536 ~ 56760851 (+) True XLOC_000777
TCONS_00001264 mRNA downstream 239071 56768263 ~ 56769327 (+) True XLOC_000778
TCONS_00001265 mRNA downstream 250303 56779495 ~ 56786921 (+) True XLOC_000779
TCONS_00001266 mRNA downstream 271829 56801021 ~ 56805426 (+) True XLOC_000780
TCONS_00001267 mRNA downstream 284653 56813845 ~ 56816695 (+) True XLOC_000782
TCONS_00001233 other upstream 1223585 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 1392257 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 2334680 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 2459626 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 3132955 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001304 other downstream 818706 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 1630959 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 2602100 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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