RNA id: TCONS_00015425


Basic Information

Item Value
RNA id TCONS_00015425
length 4575
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_007903
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 26995114 ~ 27297123 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATCTTTGAAGAAAGTGCAGCACCTACTTTGAGTATGGACTTAGCAAGTGAGGCCCATGTTCTGGTGGTTTTATTCACCTGCTTGTTCTTGATGTGCCGGGCTCAAGAAAAGGACTACACCGTAAAAGAGGAGCAGCCGGAGAATGTGCGCATCGGAAACCTGCGCAAAGACCTAAACTTGAACCTGGATCCAGACATTAAACTGTCTTCTGCGCTGCAGTTTAAACCTGTCTACAAGACAGGTGATGTGCCTTTAGTCAAGGTAGAAGCCAGCACAGGAGAAATTCTTACCACAGCCAACCGAATCGACCGCGAGAAACTCTGTTCTGGAGTCTTCAACGAGAAGCGCTGCTATTATGAGATTGAGGTTGCTGTACTACCTGATGAGATTTTCCGACTGGTCAAGATCCGCTTCCTCATCGAAGACATCAACGACAATGCCCCACTCTTTCAGTCGACAGTTATCAACATCTCCATTCCAGAAAACACAGCCATCAACAGCCGCTACCCAGTCCCTTCCGCATTTGACCCTGATATAGGAATCAATGGGATTCAGCACTATGAGCTTGTCAAGAGTGTGAGTGAATTTGGCTTGGACATCATTGAGACACCTGAGGGAGACAAATGGCCCCAACTCATAGTCCAGCAGAGCCTTGATCGAGAGACAAAGGACACCTTTGTGATGAAAATTAAAGTAGAAGATGGTGGCAACCCTCCAAAGTCCAGCACAGCCATTCTTCAAGTGACCGTCTCAGATGTGAATGACAATCGGCCGGTGTTCAAGGACAGCGAGGTGGAAGTAAACGTTCCAGAGAATGCCCCAATGGGAACGTCTGTCACTCACCTCCATGCTACTGATGCTGATCTGGGATCCAATGCTCAAATTCACTTCTCTTTCAGCAACCAAATATCCCCTTCCACCAAACGACATTTTGCTATTGACAGCACAACTGGACTGATTACCGTCAAGCAGCCACTGGACAGGGAAGTCAACCCAGTGCACAAGCTTATAGTTCTAGCCAGTGATGGAAGCTCTACACCTTCAAGGGCTACAGTGATAGTCAACGTGACAGACATTAATGACAACGTTCCCTCTATAGATACCCGTTATATAATGAATCTTGTAAATGGCACTGTGCTGTTGTCTGAAAATGCCCCACTCAACACAAAAATAGCCCTAATTACTGTGACAGACAGAGATTCAGATCTGAACGGTAAAGTGACATGTTACACTGATCATGATGTACCTTTTAGATTGAAGCCGGTCTTCAATGATCAGTTTTTACTTGAAACTGCTGCACCCTTAGATTATGAGACCACTCGAGAGTATGCGATTCGGATAGTTGCATCTGACTCTGGGAAACCTCCTTTAAACACTTCTGCAATGGTGCTGATTAAAATCAAGGATGAAAATGACAATGTTCCTGTTTTCCCCCAGCCTGAAATCCAGCTGTCCATCCCGGAAAACAATGACCCTGGCACACAGTTGATAAAAATCAGTGCAACAGATGCTGATAGTGGTTCTAATGCTCTTATTATTTATAGTCTTGGCCCAGATGCTCCTGATGGGTTTAACATAGATTCTCGATCTGGAATTCTTTCTGTTGTCAAAAGGCTAGATAGAGAGAAGCAGGAGAAGTATTCATTCACAGTCATTGCAAGGGATAACGGTACAACTCCTCTTCAAAGCAACGTCACTGTAAAGCTGATAGTCCAAGACCAAAATGATAACAGTCCTGCCTTTACCCATCCCGAGTACAACTTTTATGTGCCTGAGAACCTTCCTTTGTATGGGACAGTGGGTTTGATCACTGTCACAGATGCGGATGCTGGCGACAATGCAGTCGTCACCCTCTCGATCATTAACGGGAAGGACAATTTCATCATTGACCCCAAAACTGGGGTGATCAAGCCAAACATTACCTTCGACAGGGAGCAACAAAGCTCCTACACATTTGTTGTCAAGGCTGTGGATGCAGGTCTAATGCAAACCACCTCATATGCAAAGGTCACTATAAATGTTGTTGACGTGAACGACAATCGACCAGTGTTTGTCATCCCCTCCTCAAACTACTCCTATGATCTAGTACCTTCAAACACCAGCCCTGGATCTGTGGTGACCAGAGTGTTTGCTATAGATAATGATACTGGGATGAATGCTGAGCTCCAGTATAGTATTATTGGAGGGTCGCTGAGAGGACTGTTTACCATTGACAAAACGACAGGCAACATTACTTTGCAGGAAAAGATTGTAGCAGCAGACCAAGGTCTACATAGGCTGGTGGTGAAGGTCAAGGACTTGGGGCAGCCAGAGTCCTTACATGCAATTGCCCTTGtccatttgtttgtgaatgataCAGTCTCTAATGCCACGTTCATTCAGGAGCAACTACGCAAAAGTTTAGAGACTCCTTTAGAGCGGAACATTGGGGACAATGATGTGACACCCCAGACTAATGGCTATGTAATTGTCGTTATTGCCATAATTGCTGGGACTATGACTGTTATCCTGGTAATTTTTGTAACTGCTTTGGTACGCTGTCGACAGACACCGAGACACAAAGTTGTTCAGAAGAGCAAGCAAAGTGGCGAGTGGGTTTCACCCAACCAGGACGGTCGGcagattaaaaagaaaaagaagaagaagaagaggtcTCCAAAAAGTTTACTGTTGAATTTTGTTACCATTGAGGAAACCAAGTCTGATGACCCTACTCATGAACACGTGAATGGCACCTTAGACCTACCTGTTGAACTTGAGGAGCAGACAATGGGAAAGTACAACTGGGCTACCACACCAACTACCTTCAAACCCGACAGTCCTGACTTAGCCAAGCACTACAAATCCGCTTCCCCTCAGCCAACATTCCAGATCAAACCAGAGACCCCTGTGGCTCCCAAGAAGCATCATGTCATTCAGGAACTCCCACTGGACAACACATTCGTGGTGGGCTGTGACTCGCTTTCCAAATGTTCCTCCAGCAGCTCCGACCCCTACAGCGTTTCAGAGTGCAGCTGTCAAGGGGGCTTCAAGGCACCTGGACAAATCCACACCAGACAGaACCAGACCCCGGATAAAGCATTCCCTGTTGTCCCAACCATGTGCCCTCACAAGCAGACACAGCGGCGCGTGACCTTCCACCTGCCGGACGGTTCTCAGGAGAGCTGCAGTGACAGTGGGCTTGGAGAGCCGGAGCCCAACAGCGCTGCCAGCATCACCCAGCCTCTGCCCCTAGGCTTCCCTCAGGATGAGTACTATGAACAGACCTCACCCAACAGCCGAACCGAGGGTGACGGCAACTCTGACCCCGAGTCCAGTAAGTACTGACTGCTGGCCTTTACCTGTACATTTACAGCTGCATTGTCTCTGAGGGTCTCCATCCAGGCCGGGGTGACAGATTGATAagctattttgttgttgttgttacatacaaaattatatttttgtccATGAACACATTCTGGTTTTCTTTGGTTGTTGCATTGCATCTTTCTTGCACTACTATTTAAAAGTTTGAGatcgtaagtttttttttttttttttttttttcttggaaacTAACCTACaacagtatttatttaataataataaaaaaacatgtttaaaactattttaatgagctttatttattttaattttataaattgtatttaacTTTTCAATTccttaaatttctgtcattttcaGCATCTTTCAGTCTTACATGATCAATAGTTTAGTTCAATAGTAGCTTTTAGTTAAATCATGAATGTTAAATTATAGATATAATtttaagaggatcacatgcttatgattgacacggctggtcccgcattaacGTATGATTTACctatcagatgattcctaacttatttaaaataacctTAGTCATCTTCTtcttgaagaattcccccttccacctCCTATTCCTATCTTTTCCTCTATAGGACAGCTTCCACCTCCTATTCCTATCTTTTCCTCTATAGgacagcacggtggcccagtggttaacattgttgcctcacagcaagaatgtctctggtttgGTCTTTACCcagccagttgacatttctgtgcgtagtttatggtctccccatgctcatgtgggtttcccctgagttcttcggtttcctcccacagtccaaaacatgagacataagttaattgactaaaccTAGTAGACACATTTCAACCAGCAGTAAAGGTTGGGGGTTGTGGTTTGAGGCGGGTTCTCAAgatatacctgagctcaaactcccctctttcCCTGCAAAGGGGCTTGAGGATCTTaggagctcagggttctctcccggtatgctagcatgccaaacaagctttattaccaatcatcagctaagtgtaaactcttcaAATAACTCTAACTGAGCCCAAATATTTTGACTTAGTTGGGTTAATAAAGGAAATTTTTTTCATATACCtgaaaatattgttatattttaatgtttaatatttttatatttttatttttctgccatatttagaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-21 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human PCDH11X (protocadherin 11 X-linked) and PCDH11Y (protocadherin 11 Y-linked).

Ensembl:

ensembl_id ENSDART00000159727

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016404 lncRNA downstream 323693 26776218 ~ 26796713 (-) True XLOC_007902
TCONS_00016403 lncRNA downstream 323920 26776218 ~ 26796486 (-) False XLOC_007902
TCONS_00016402 lncRNA downstream 324066 26776218 ~ 26796340 (-) False XLOC_007902
TCONS_00016401 lncRNA downstream 324069 26776218 ~ 26796337 (-) False XLOC_007902
TCONS_00016405 lncRNA upstream 33177 27322219 ~ 27334804 (-) False XLOC_007905
TCONS_00015428 lncRNA upstream 33177 27322219 ~ 27339283 (-) False XLOC_007905
TCONS_00016406 lncRNA upstream 33177 27322219 ~ 27339439 (-) True XLOC_007905
TCONS_00016407 lncRNA upstream 408983 27698025 ~ 27714037 (-) True XLOC_007907
TCONS_00016408 lncRNA upstream 698421 27987463 ~ 28005263 (-) True XLOC_007908
TCONS_00015422 mRNA downstream 415577 26703331 ~ 26704829 (-) True XLOC_007900
TCONS_00015421 mRNA downstream 583902 26511041 ~ 26536504 (-) True XLOC_007898
TCONS_00015418 mRNA downstream 622199 26467200 ~ 26498207 (-) False XLOC_007897
TCONS_00015430 mRNA upstream 709714 27998756 ~ 28001986 (-) False XLOC_007909
TCONS_00015431 mRNA upstream 710763 27999805 ~ 28052474 (-) False XLOC_007909
TCONS_00015432 mRNA upstream 724584 28013626 ~ 28052551 (-) True XLOC_007909
TCONS_00015434 mRNA upstream 1137560 28426602 ~ 28432699 (-) False XLOC_007911
TCONS_00015435 mRNA upstream 1137738 28426780 ~ 28430505 (-) True XLOC_007911
TCONS_00015386 other downstream 1521406 25595871 ~ 25599000 (-) True XLOC_007883
TCONS_00015379 other downstream 1961200 25159129 ~ 25159206 (-) True XLOC_007880
TCONS_00015363 other downstream 2162010 24958280 ~ 24958396 (-) True XLOC_007872
TCONS_00015361 other downstream 2557523 24562801 ~ 24562883 (-) True XLOC_007870
TCONS_00015355 other downstream 2728982 24316770 ~ 24391424 (-) False XLOC_007865
TCONS_00015429 other upstream 267444 27556486 ~ 27556622 (-) True XLOC_007906
TCONS_00015433 other upstream 839116 28128158 ~ 28128278 (-) True XLOC_007910
TCONS_00015446 other upstream 2063965 29353007 ~ 29353123 (-) True XLOC_007918
TCONS_00015467 other upstream 3148880 30437922 ~ 30452210 (-) False XLOC_007928
TCONS_00015524 other upstream 4037559 31326601 ~ 31326717 (-) True XLOC_007951

Expression Profile

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