RNA id: TCONS_00016407


Basic Information

Item Value
RNA id TCONS_00016407
length 339
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_007907
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 27698025 ~ 27714037 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTGGTGTGTATGAACAGTCTCTGAGATTGAAATTCTTCGCAGTTGTCTCCTGGTGGCGTCCTTCACTATAGTCTCCTTCATGCACTGTCATTTTTGACAAAGGTCCTGAAAGAAATATAGGATGGTCCTATCATCCTGTTCCTTTTCATCCTGTGGGAACCAattggattgttggaagatgGACAAGCCTAACAACACTGAGGAAGACAGATGAATGCATGAAGACAGACCCGCACTAATACCCCCACCCCAGAGGCATAATGTGACCAGAAGGGAAGAAAACTAGAAAACTAGTTTTGAGGGGGCATGGAAGGTTATGGAAGGTTCTTtcctaata

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016406 lncRNA downstream 358586 27322219 ~ 27339439 (-) True XLOC_007905
TCONS_00015428 lncRNA downstream 358742 27322219 ~ 27339283 (-) False XLOC_007905
TCONS_00016405 lncRNA downstream 363221 27322219 ~ 27334804 (-) False XLOC_007905
TCONS_00016404 lncRNA downstream 901312 26776218 ~ 26796713 (-) True XLOC_007902
TCONS_00016403 lncRNA downstream 901539 26776218 ~ 26796486 (-) False XLOC_007902
TCONS_00016408 lncRNA upstream 273426 27987463 ~ 28005263 (-) True XLOC_007908
TCONS_00015438 lncRNA upstream 745431 28459468 ~ 28463875 (-) False XLOC_007912
TCONS_00016052 lncRNA upstream 863436 28577473 ~ 28580808 (-) True XLOC_007915
TCONS_00016053 lncRNA upstream 880148 28594185 ~ 28596730 (-) True XLOC_007916
TCONS_00016055 lncRNA upstream 1197872 28911909 ~ 28915186 (-) False XLOC_007917
TCONS_00015427 mRNA downstream 400902 27280705 ~ 27297123 (-) True XLOC_007903
TCONS_00015425 mRNA downstream 408983 27120406 ~ 27289042 (-) False XLOC_007903
TCONS_00015424 mRNA downstream 576171 26995114 ~ 27121854 (-) False XLOC_007903
TCONS_00015422 mRNA downstream 993196 26703331 ~ 26704829 (-) True XLOC_007900
TCONS_00015421 mRNA downstream 1161521 26511041 ~ 26536504 (-) True XLOC_007898
TCONS_00015430 mRNA upstream 284719 27998756 ~ 28001986 (-) False XLOC_007909
TCONS_00015431 mRNA upstream 285768 27999805 ~ 28052474 (-) False XLOC_007909
TCONS_00015432 mRNA upstream 299589 28013626 ~ 28052551 (-) True XLOC_007909
TCONS_00015434 mRNA upstream 712565 28426602 ~ 28432699 (-) False XLOC_007911
TCONS_00015435 mRNA upstream 712743 28426780 ~ 28430505 (-) True XLOC_007911
TCONS_00015429 other downstream 141403 27556486 ~ 27556622 (-) True XLOC_007906
TCONS_00015426 other downstream 522184 27175726 ~ 27175841 (-) True XLOC_007904
TCONS_00015386 other downstream 2099025 25595871 ~ 25599000 (-) True XLOC_007883
TCONS_00015379 other downstream 2538819 25159129 ~ 25159206 (-) True XLOC_007880
TCONS_00015363 other downstream 2739629 24958280 ~ 24958396 (-) True XLOC_007872
TCONS_00015433 other upstream 414121 28128158 ~ 28128278 (-) True XLOC_007910
TCONS_00015446 other upstream 1638970 29353007 ~ 29353123 (-) True XLOC_007918
TCONS_00015467 other upstream 2723885 30437922 ~ 30452210 (-) False XLOC_007928
TCONS_00015524 other upstream 3612564 31326601 ~ 31326717 (-) True XLOC_007951
TCONS_00015525 other upstream 3752634 31466671 ~ 31466782 (-) False XLOC_007952