RNA id: TCONS_00003240


Basic Information

Item Value
RNA id TCONS_00003240
length 1463
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_000773
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56562827 ~ 56564352 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGGTACATCCAACATTTTCTCACGGCATTTCCTAacttgattcagtggctaattcgtatgcaTTTGGACGATCTCATTcgcccaatgacagttgggtttcgGTGCCATTTCGTATGAATGAACTCATACGACTTAGCCACTAAACTCACTAAACGTTTACACTTAACACATTTACATTTTCTTGTGTGATTAGGCTGGGTAAAACACAAGTACCGAAAGTGCTGAAGAAGTGACCAATGTATTTTCAGATTcgattactaataataatgataacaataacataaatgataaaaataaaaactgttgagCTAAATATTTAATGAGATGCAGCAGTGGCTTTTATCTTCGTTTAATTCTTCTTGGTTATAGGCGTCTTGGCGTTTGTATCAGCTGTagtggtttttattttagtttgtttcgtCTCGGTTTTAGGCGTCTTGACATTTGTACCAGCTTTAGTGTCTTTTATCATCGTTTGTTTCTCCTCGGTTATTGGCGTCTTGACATTTGTACCAGCTTTAGTGTCTTTTATCTTCGTTTGATTCTTCCCGGTTATAGGCGTCTTGACATTTGTACCAGCTTTAGTGTCTTTTATTATCGCTTGTTTCTTCTCGGTTATAGGCGTCTTGACATTTGTACCAGCTCCAGCGGCTTTTTCCATCGCTTGTTTCTTCTCGGTTATTGGCGTCTTGCCAGTTTTACCAGCTCCAGCAGCTTTTTCCATAGCTTGTTTCTTCTCGGTTATAGGCGTCTTGACATTTGTACCACCTCCAGCGGCTTTTTCCATCGCTTGTTTCTTCTCGGTTATTGGCGTCTTGGCAGTTTTACCAGCTCCAGCAGCTTTTTCCATCGCTTGTTTCTTGTCGGTTATAGGCGTCTTGACATTTGTACCAGCTCCAGCAGCTTTTTCCATCGCTTGTTTCTTCTCGGTTATAGGCGTCTTGACATTTGTACCAGCTCCAGCGGCTTTTTCCATGACTTGTTTCTTCTCGGTTATAGGCGTCTTGACATTTGTACCAGCTGTAGTGTCTTTCATCATCGTTTGTTTCGTCTCGGTTGTAGGAGTCGTGGCCTTTGTTCCAGCTGTAGTGTCTTTCATCATCGTTTGTTTCGTCTCGGTTGTAGGAGTCGTGGCCTTTGTTCCAGCTGTAGTGTCTTTCATCATCGTTTGTTTCGTCTCGGTTGTAGGAGTCGTGGCCTTTGTTCCAGCTGTAGTGTCTTTCATCATCGTTTGTTTCGTCTCGGTTGTAGGAGTCGTGGCCTTTGTTCCAGCTGTAGTGTCTTTTAACTTTGTTAGCTtcttctggatttttttttttgtcttcttgatttttttttttggttttcttcTGGATTTTATACATCATAGCCACTGTATCAGCGATAAGAACAGCTTTTTCGACTCCCGACTTCATCTTTTTCCGGATCTTCTTGCGCATTTTCTTATTAACCAGCTCATCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003237 lncRNA upstream 6522 56416638 ~ 56556305 (+) True XLOC_000768
TCONS_00003235 lncRNA upstream 833701 55714918 ~ 55729126 (+) True XLOC_000760
TCONS_00003236 lncRNA upstream 841412 55717578 ~ 55721415 (+) True XLOC_000761
TCONS_00003234 lncRNA upstream 883380 55678912 ~ 55679447 (+) True XLOC_000758
TCONS_00003233 lncRNA upstream 895467 55666862 ~ 55667360 (+) True XLOC_000757
TCONS_00003241 lncRNA downstream 5162 56569514 ~ 56603810 (+) True XLOC_000774
TCONS_00003243 lncRNA downstream 95845 56660197 ~ 56662651 (+) False XLOC_000775
TCONS_00003242 lncRNA downstream 95845 56660197 ~ 56662651 (+) True XLOC_000775
TCONS_00002885 lncRNA downstream 104806 56669158 ~ 56683634 (+) True XLOC_000776
TCONS_00002886 lncRNA downstream 241782 56806134 ~ 56807602 (+) True XLOC_000781
TCONS_00001262 mRNA upstream 33635 56520836 ~ 56529192 (+) True XLOC_000771
TCONS_00001260 mRNA upstream 39780 56502706 ~ 56523047 (+) False XLOC_000771
TCONS_00001261 mRNA upstream 39780 56520836 ~ 56523047 (+) False XLOC_000771
TCONS_00001259 mRNA upstream 94226 56463494 ~ 56468601 (+) True XLOC_000770
TCONS_00001258 mRNA upstream 104790 56447107 ~ 56458037 (+) True XLOC_000769
TCONS_00001263 mRNA downstream 191184 56755536 ~ 56760851 (+) True XLOC_000777
TCONS_00001264 mRNA downstream 203911 56768263 ~ 56769327 (+) True XLOC_000778
TCONS_00001265 mRNA downstream 215143 56779495 ~ 56786921 (+) True XLOC_000779
TCONS_00001266 mRNA downstream 236669 56801021 ~ 56805426 (+) True XLOC_000780
TCONS_00001267 mRNA downstream 249493 56813845 ~ 56816695 (+) True XLOC_000782
TCONS_00001233 other upstream 1265576 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 1434248 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 2376671 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 2501617 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 3174946 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001304 other downstream 783546 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 1595799 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 2566940 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

//