RNA id: TU198404


Basic Information

Item Value
RNA id TU198404
length 263
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G174676
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 852144 ~ 852406 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAGCGGAGTGGAATCTGTATTTTTGAATGAATCACACCGTCTACACCAGACGCGAGCGGTGCGACGTGTCAAAAGACAATAGAACCCATTATAATAAGTGATACTGTCCCAGTTCCATTTCTAACGTAGTCCAAGTGCTTTGCAATGGTCGGTTTGTCGCGTTCAGTATAGACAGCTTTTAGCTGTTGCGAAGCGACAACGCTCACATCCGGTGTGATTCATTCAAAAATACAGATTCAACTCCACTCCGCTGTGGTTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198403 lncRNA upstream 662 849889 ~ 851482 (+) True G174675
TU198402 lncRNA upstream 3501 848305 ~ 848643 (+) True G174674
TU198401 lncRNA upstream 18293 833405 ~ 833851 (+) True G174673
TU198400 lncRNA upstream 19068 832438 ~ 833076 (+) True G174672
TU198398 lncRNA upstream 20281 830730 ~ 831863 (+) True G174671
TU198443 lncRNA downstream 121567 973973 ~ 974288 (+) True G174709
TU198446 lncRNA downstream 129295 981701 ~ 981992 (+) True G174712
TU198465 lncRNA downstream 170036 1022442 ~ 1023487 (+) True G174731
TU198477 lncRNA downstream 183044 1035450 ~ 1035773 (+) False G174742
TU198478 lncRNA downstream 183044 1035450 ~ 1035773 (+) False G174742
CI01000037_00808744_00809273.mRNA mRNA upstream 42271 808744 ~ 809873 (+) True CI01000037_00808744_00809273
CI01000037_00796721_00807196.mRNA mRNA upstream 44810 795352 ~ 807334 (+) True CI01000037_00796721_00807196
CI01000037_00784200_00785176.mRNA mRNA upstream 66968 783585 ~ 785176 (+) True CI01000037_00784200_00785176
CI01000037_00775538_00779866.mRNA mRNA upstream 72057 775538 ~ 780087 (+) True CI01000037_00775538_00779866
CI01000037_00729466_00733346.mRNA mRNA upstream 118034 729017 ~ 734110 (+) True CI01000037_00729466_00733346
CI01000037_00874555_00887437.mRNA mRNA downstream 22081 874487 ~ 888017 (+) True CI01000037_00874555_00887437
CI01000037_00987906_00988350.mRNA mRNA downstream 135500 987906 ~ 988372 (+) False CI01000037_00987906_00988350
CI01000037_01075201_01076456.mRNA mRNA downstream 221568 1073974 ~ 1076489 (+) True CI01000037_01075201_01076456
CI01000037_01098540_01104541.mRNA mRNA downstream 245666 1098072 ~ 1105186 (+) True CI01000037_01098540_01104541
CI01000037_01670886_01672687.mRNA mRNA downstream 818480 1670886 ~ 1673145 (+) False CI01000037_01670886_01672687
TU198182 other upstream 621748 228982 ~ 229587 (+) True G174501
TU198421 other downstream 135453 989270 ~ 989759 (+) True G174689
TU198741 other downstream 761470 1613876 ~ 1614274 (+) False G174949
TU198740 other downstream 761484 1613890 ~ 1614274 (+) False G174949
TU198758 other downstream 819934 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU199493 other downstream 1113336 1970185 ~ 1970391 (+) True G175626

Expression Profile