RNA id: TCONS_00016053


Basic Information

Item Value
RNA id TCONS_00016053
length 1537
lncRNA type inter_gene
GC content 0.34
exon number 4
gene id XLOC_007916
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 28594185 ~ 28596730 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgttatttctagcttttaaaatcaggccttaaatttctttgtcgtcatattcagttttagaaatttcaaaactgtttaaattaaatctgtgttcatcgaatcaaagcaactaacatgataatcagctctattgctaaccgttttgaaggttaacgttagacatcatgcaattgtactacttccactctcagctaaatgacactgtgactttttgtacatacagaattgtaggtcgggtgttgctgactacagataggttcttaaatggaggcatgtgaaaggtgggtaaaatatttattttgaactactatgcctggcatatccagataaaataaatattacagtgtatttatcaatgatacttttgcagcaaggaaagtgaaacttcagctagaccttgagttcagtttacaacatgaagatcctgctttcaacatctgatcaacacctgattttcatctgagagtaccaacatgttacaaatgagaattttccccacaaattctttgcaaaactggaccaccacctatttcatttaatgacaattttaaggcaaacagcatccaaaactggcaagacagcagataccctggctaatcttttaaaggattatgatgagcaggtatgtttggggtcacgtgttaaagtatacattaaaatataatttgaattattattatttttttaatttttaaaaaattgattcttgatttccaggaactgaataatgtcagttcatgacggactactgttatcagaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccatgattgataatcctgctgactgaagatgctttattggccctgcattcactgagggtctctgttgtcctgaagaatgaattggacaccacccacagcacacttccagacctttcttgtcttgtatggattaatcagactccagctcgtgacgatcccacatccgactactcactgtccttcacttacttcccggagcaccagagcacctcaccttgaagaagagcaccgtttacaccccattcacgttgtaaataaagcaccctctggggacttgtctgtaaacttatccaactgtgtcgctgttttccctctgcttcgctactatatatatatatatatatatatatatatatataatctgctctccgttaaacagaaattgggggaaaaataaatgggggcgaataattctgacttcaacgatatatatatatatatatatatatatatatatatatacagtttctgtgtagtttacactaaacgagtcacttcacagaatgtgcacttattttttttaacgaatgccttaagagtaagttttacacttattaatgtattattaaattttatcaaacttatagttgtttttttcttgaggctcttatgtctgatatcatatttacattgtgggtaatttttattaatttcagaatagtgttcattttcaatctctttatgtctaatagtttttatcgttttaagacatttgtaattgcataggag

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0001756 somitogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0061053 somite development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016052 lncRNA downstream 13377 28577473 ~ 28580808 (-) True XLOC_007915
TCONS_00015438 lncRNA downstream 130310 28459468 ~ 28463875 (-) False XLOC_007912
TCONS_00016408 lncRNA downstream 588922 27987463 ~ 28005263 (-) True XLOC_007908
TCONS_00016407 lncRNA downstream 880148 27698025 ~ 27714037 (-) True XLOC_007907
TCONS_00016406 lncRNA downstream 1254746 27322219 ~ 27339439 (-) True XLOC_007905
TCONS_00016055 lncRNA upstream 315179 28911909 ~ 28915186 (-) False XLOC_007917
TCONS_00016054 lncRNA upstream 315179 28911909 ~ 28915186 (-) True XLOC_007917
TCONS_00016056 lncRNA upstream 1104590 29701320 ~ 29701634 (-) True XLOC_007919
TCONS_00016057 lncRNA upstream 1109974 29706704 ~ 29707043 (-) True XLOC_007920
TCONS_00016409 lncRNA upstream 1186158 29782888 ~ 29783707 (-) False XLOC_007921
TCONS_00015441 mRNA downstream 26033 28563081 ~ 28568152 (-) False XLOC_007914
TCONS_00015444 mRNA downstream 26078 28563142 ~ 28568107 (-) False XLOC_007914
TCONS_00015442 mRNA downstream 26340 28563101 ~ 28567845 (-) False XLOC_007914
TCONS_00015443 mRNA downstream 27947 28563106 ~ 28566238 (-) False XLOC_007914
TCONS_00015445 mRNA downstream 28510 28563201 ~ 28565675 (-) True XLOC_007914
TCONS_00015447 mRNA upstream 1185778 29782508 ~ 29800107 (-) False XLOC_007921
TCONS_00015448 mRNA upstream 1186158 29782888 ~ 29799993 (-) False XLOC_007921
TCONS_00015449 mRNA upstream 1210367 29807097 ~ 29892880 (-) False XLOC_007922
TCONS_00015450 mRNA upstream 1210367 29807097 ~ 29905962 (-) False XLOC_007922
TCONS_00015454 mRNA upstream 1212031 29808761 ~ 29892880 (-) False XLOC_007922
TCONS_00015433 other downstream 465907 28128158 ~ 28128278 (-) True XLOC_007910
TCONS_00015429 other downstream 1037563 27556486 ~ 27556622 (-) True XLOC_007906
TCONS_00015426 other downstream 1418344 27175726 ~ 27175841 (-) True XLOC_007904
TCONS_00015386 other downstream 2995185 25595871 ~ 25599000 (-) True XLOC_007883
TCONS_00015379 other downstream 3434979 25159129 ~ 25159206 (-) True XLOC_007880
TCONS_00015446 other upstream 756277 29353007 ~ 29353123 (-) True XLOC_007918
TCONS_00015467 other upstream 1841192 30437922 ~ 30452210 (-) False XLOC_007928
TCONS_00015524 other upstream 2729871 31326601 ~ 31326717 (-) True XLOC_007951
TCONS_00015525 other upstream 2869941 31466671 ~ 31466782 (-) False XLOC_007952
TCONS_00015526 other upstream 2870296 31467026 ~ 31467130 (-) False XLOC_007952

Expression Profile

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