RNA id: TU199551


Basic Information

Item Value
RNA id TU199551
length 365
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G175670
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2064172 ~ 2064536 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACAATGGTCCAAAACAAACATCAAAACCAACATAAAAATATGTCACTGAGCACAAAATGAAGCTTCTGCCTTGGCCATCCCAGTCCCCTGACCTGAACCCTAAAGAAAATGAGTGGAGTGAACTGAAGAGAAGAAGCACCAACATGGAGCTGGGAATCTGAAGGATCTGGAGAGATTCTGCATGAAGGAATGGTCTCTGATCTCTTGTCAGGTGTTCTCCAAACTCATCAGGCATTATAGGTGAAGACTCAGAGCTGTTATCTTGGCAAAAGGAGGTTGCAAAAAGTATTGAATAAAAGGGTGCCAATAATTGTGGCCAATGTGTTTTGGAGAAAAACATTTATTTCATAATGTGATTTTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199518 lncRNA upstream 4093 2031546 ~ 2060079 (+) True G175641
TU198804 lncRNA upstream 283303 1762794 ~ 1780869 (+) True G175004
TU198803 lncRNA upstream 308990 1751814 ~ 1755182 (+) True G175003
TU198743 lncRNA upstream 450021 1613876 ~ 1614151 (+) False G174949
TU198742 lncRNA upstream 450021 1613890 ~ 1614151 (+) True G174949
TU199555 lncRNA downstream 8892 2073428 ~ 2073640 (+) True G175674
TU199572 lncRNA downstream 75053 2139589 ~ 2139812 (+) True G175689
TU199576 lncRNA downstream 78415 2142951 ~ 2143263 (+) True G175693
TU199498 lncRNA downstream 79526 2144062 ~ 2295856 (+) False G175628
TU199495 lncRNA downstream 228366 2292902 ~ 2294251 (+) True G175628
CI01000037_01965864_01966433.mRNA mRNA upstream 97737 1965603 ~ 1966435 (+) False CI01000037_01965864_01966433
CI01000037_01925100_01960498.mRNA mRNA upstream 103450 1925100 ~ 1960722 (+) True CI01000037_01925100_01960498
CI01000037_01890963_01896442.mRNA mRNA upstream 167728 1890963 ~ 1896444 (+) True CI01000037_01890963_01896442
CI01000037_01884695_01885456.mRNA mRNA upstream 178542 1884695 ~ 1885630 (+) True CI01000037_01884695_01885456
CI01000037_01873612_01880555.mRNA mRNA upstream 183617 1873612 ~ 1880555 (+) True CI01000037_01873612_01880555
CI01000037_02065346_02075634.mRNA mRNA downstream 740 2065276 ~ 2076284 (+) True CI01000037_02065346_02075634
CI01000037_02087502_02094770.mRNA mRNA downstream 22966 2087502 ~ 2095068 (+) True CI01000037_02087502_02094770
CI01000037_02248789_02250329.mRNA mRNA downstream 184058 2248594 ~ 2251121 (+) True CI01000037_02248789_02250329
CI01000037_02279319_02280446.mRNA mRNA downstream 214622 2279158 ~ 2280756 (+) True CI01000037_02279319_02280446
CI01000037_02282458_02287205.mRNA mRNA downstream 216811 2281347 ~ 2287285 (+) True CI01000037_02282458_02287205
TU199493 other upstream 93781 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 386765 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198741 other upstream 449898 1613876 ~ 1614274 (+) False G174949
TU198740 other upstream 449898 1613890 ~ 1614274 (+) False G174949
TU198421 other upstream 1074413 989270 ~ 989759 (+) True G174689
TU200317 other downstream 775224 2839760 ~ 2840053 (+) True G176346
TU200353 other downstream 912326 2976862 ~ 3087968 (+) True G176377
TU200774 other downstream 2148747 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile