RNA id: TU199576


Basic Information

Item Value
RNA id TU199576
length 313
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G175693
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2142951 ~ 2143263 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAATTTACGGTAAAAAAACAGCAGCTGTGGTTGCCAGAACTTTACCGTAAAAAATACGGTAGCAACGTTTTAGGTTTTATGTGACAGCACTTAGTTGTCTATTTTACAGTTCAAAACCCTATAATTTAAAGGTTTATATTGTAATAATTATGGTTCATAACTGTTTATTTTACACACTGTAAAAAAAAAAAATAAAAAATCAGTTAAATTTACAGTAAAATTTTTTTTTCATTAACTGATATAATGTTAATTTACCAACCTACTGAAGTACTAATATCTGTTTTGTACCTTTGTAATACACTGACAACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199572 lncRNA upstream 3139 2139589 ~ 2139812 (+) True G175689
TU199555 lncRNA upstream 69311 2073428 ~ 2073640 (+) True G175674
TU199551 lncRNA upstream 78415 2064172 ~ 2064536 (+) True G175670
TU199518 lncRNA upstream 82872 2031546 ~ 2060079 (+) True G175641
TU198804 lncRNA upstream 362082 1762794 ~ 1780869 (+) True G175004
TU199498 lncRNA downstream 799 2144062 ~ 2295856 (+) False G175628
TU199495 lncRNA downstream 149639 2292902 ~ 2294251 (+) True G175628
TU199502 lncRNA downstream 155064 2298327 ~ 2300350 (+) False G175630
TU199504 lncRNA downstream 155064 2298327 ~ 2300350 (+) True G175630
TU199652 lncRNA downstream 159474 2302737 ~ 2303537 (+) True G175767
CI01000037_02087502_02094770.mRNA mRNA upstream 47883 2087502 ~ 2095068 (+) True CI01000037_02087502_02094770
CI01000037_02065346_02075634.mRNA mRNA upstream 66667 2065276 ~ 2076284 (+) True CI01000037_02065346_02075634
CI01000037_01965864_01966433.mRNA mRNA upstream 176516 1965603 ~ 1966435 (+) False CI01000037_01965864_01966433
CI01000037_01925100_01960498.mRNA mRNA upstream 182229 1925100 ~ 1960722 (+) True CI01000037_01925100_01960498
CI01000037_01890963_01896442.mRNA mRNA upstream 246507 1890963 ~ 1896444 (+) True CI01000037_01890963_01896442
CI01000037_02248789_02250329.mRNA mRNA downstream 105331 2248594 ~ 2251121 (+) True CI01000037_02248789_02250329
CI01000037_02279319_02280446.mRNA mRNA downstream 135895 2279158 ~ 2280756 (+) True CI01000037_02279319_02280446
CI01000037_02282458_02287205.mRNA mRNA downstream 138084 2281347 ~ 2287285 (+) True CI01000037_02282458_02287205
CI01000037_02334480_02338932.mRNA mRNA downstream 188201 2331464 ~ 2338989 (+) True CI01000037_02334480_02338932
CI01000037_02378066_02392175.mRNA mRNA downstream 234803 2378066 ~ 2392871 (+) True CI01000037_02378066_02392175
TU199493 other upstream 172560 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 465544 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198741 other upstream 528677 1613876 ~ 1614274 (+) False G174949
TU198740 other upstream 528677 1613890 ~ 1614274 (+) False G174949
TU198421 other upstream 1153192 989270 ~ 989759 (+) True G174689
TU200317 other downstream 696497 2839760 ~ 2840053 (+) True G176346
TU200353 other downstream 833599 2976862 ~ 3087968 (+) True G176377
TU200774 other downstream 2070020 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile